RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 UQCC2Q9BRT2 126 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 RAB33BQ9H082 229 aa12.8□□□□□ -0.36
VPS35-210ENST00000568784 LDLRAD4O15165 306 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 DUX1O43812 170 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 GSTP1P09211 210 aaKnown RBP12.79□□□□□ -0.36
VPS35-210ENST00000568784 P2RY4P51582 365 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 TAS2R46P59540 309 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 IGSF11Q5DX21 431 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 DHRS11Q6UWP2 260 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 KCNK17Q96T54 332 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 BORCS7-ASMTA0A0B4J1R7 106 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 RAMP1O60894 148 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 POU2F2P09086 479 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 KLK2P20151 261 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 FPR2P25090 351 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 RPS10P46783 165 aaKnown RBP12.79□□□□□ -0.36
VPS35-210ENST00000568784 RAET1LQ5VY80 246 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 IL34Q6ZMJ4 242 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 PLXDC1Q8IUK5 500 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 OR2AE1Q8NHA4 323 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 RCC2Q9P258 522 aaKnown RBP12.79□□□□□ -0.36
VPS35-210ENST00000568784 CA14Q9ULX7 337 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 LINC01387J3KSC0 135 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 MELTFP08582 738 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 OR10G3Q8NGC4 313 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 IP6K3Q96PC2 410 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 SLC2A8Q9NY64 477 aa12.79□□□□□ -0.36
VPS35-210ENST00000568784 A0A1B0GX78 115 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 C5orf63A6NC05 138 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 OR5H15A6NDH6 313 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 DBHP09172 617 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 HNRNPKP61978 463 aaKnown RBP eCLIP12.78□□□□□ -0.36
VPS35-210ENST00000568784 AWAT1Q58HT5 328 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 FAHD2BQ6P2I3 314 aaPredicted RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 TMEM182Q6ZP80 229 aaPredicted RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 FAHD2AQ96GK7 314 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 FAAP24Q9BTP7 215 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 CYTL1Q9NRR1 136 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 RCL1Q9Y2P8 373 aaKnown RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 CACNA1EQ15878 2313 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 OR2J2O76002 312 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 GUSBP08236 651 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 TBPP20226 339 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 PIGPP57054 158 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 ACTBL2Q562R1 376 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 GGNBP1Q5YKI7 109 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 ZNF529Q6P280 563 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 FBXW12Q6X9E4 464 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 OR10S1Q8NGN2 331 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 NAA11Q9BSU3 229 aaPredicted RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 DEFB126Q9BYW3 111 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 PADI1Q9ULC6 663 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 LHFPL6Q9Y693 200 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 C2orf16Q68DN1 1984 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 UMAD1C9J7I0 102 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 OR5H8P0DN80 308 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 PNLIPP16233 465 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 SPINK2P20155 84 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 CCNOP22674 350 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 PTAFRP25105 342 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 APOBEC1P41238 236 aaKnown RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 EFNA3P52797 238 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 PDZD11Q5EBL8 140 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 Q7L0L9 218 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 PRRX2Q99811 253 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 SLC26A1Q9H2B4 701 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 MYOZ1Q9NP98 299 aaPredicted RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 FAM212BQ9NTI7 297 aaPredicted RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 MMP24Q9Y5R2 645 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 ESPL1Q14674 2120 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 TRBV23-1A0A0A0MS06 115 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 ZNHIT1O43257 154 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 ISG15P05161 165 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 DHRS7BQ6IAN0 325 aaPredicted RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 DEGS2Q6QHC5 323 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 RNASE11Q8TAA1 199 aaKnown RBP12.78□□□□□ -0.36
VPS35-210ENST00000568784 CNTNAP3Q9BZ76 1288 aa12.78□□□□□ -0.36
VPS35-210ENST00000568784 A0A1W2PPE2 198 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 TMEM14DPA8MWL7 114 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 C9JQL5 133 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 HSPB6O14558 160 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 NPIPB7O75200 414 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 IFI6P09912 130 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 NCMAPQ5T1S8 102 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 EMG1Q92979 244 aaKnown RBP12.77□□□□□ -0.36
VPS35-210ENST00000568784 DOCK7Q96N67 2140 aa12.77□□□□□ -0.36
VPS35-210ENST00000568784 MEX3AA1L020 520 aaKnown RBP12.77□□□□□ -0.37
VPS35-210ENST00000568784 LCATP04180 440 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 CSNK1A1P48729 337 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 HNF4GQ14541 408 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 PPP1R3BQ86XI6 285 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 ARHGEF39Q8N4T4 335 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 TMEM217Q8N7C4 229 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 SGK3Q96BR1 496 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 TTLL8A6PVC2 850 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 NPIPA2E9PIF3 369 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 NPIPA3F8WFD2 350 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 FGF16O43320 207 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 HPNP05981 417 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms