RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 MED12LQ86YW9 2145 aa10.6□□□□□ -0.71
HDAC6-230ENST00000488543 KALRNO60229 2985 aa10.6□□□□□ -0.71
HDAC6-230ENST00000488543 PKD1L2Q7Z442 2459 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 LOC100509620A0A075B734 347 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 LOC390937A0A1W2PQ73 354 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 OR6C6A6NF89 314 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 MCRIP1C9JLW8 97 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 F5H5K5 113 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 RPL36A-HNRNPH2H7BZ11 118 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 AQP7O14520 342 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 PRAF2O60831 178 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 NFYAP23511 347 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 FOXG1P55316 489 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 RNPS1Q15287 305 aaKnown RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 PRR30Q53SZ7 412 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 ZNF627Q7L945 461 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 NUFIP2Q7Z417 695 aaKnown RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 ABHD12BQ7Z5M8 362 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 TMED4Q7Z7H5 227 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 RBPMSQ93062 196 aaKnown RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 PRDM14Q9GZV8 571 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 WNT5BQ9H1J7 359 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 PARPBPQ9NWS1 579 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 MEGF11A6BM72 1044 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 NAP1L6A6NFF2 107 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 SLC22A20A6NK97 555 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 H7C417 338 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 XRCC3O43542 346 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 SGCEO43556 437 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 MMP7P09237 267 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 GIPP09681 153 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 HGFACQ04756 655 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 HLXQ14774 488 aaPredicted RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 STK11Q15831 433 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 MOGAT2Q3SYC2 334 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 C1orf100Q5SVJ3 147 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 GLT8D1Q68CQ7 371 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 RPUSD3Q6P087 351 aaKnown RBP10.59□□□□□ -0.71
HDAC6-230ENST00000488543 ZNF813Q6ZN06 617 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 GCNT2Q8N0V5 402 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 OR14K1Q8NGZ2 314 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 PGAM5Q96HS1 289 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 TRIB1Q96RU8 372 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 MICU1Q9BPX6 476 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 ARL6Q9H0F7 186 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 DIABLOQ9NR28 239 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 MTFP1Q9UDX5 166 aa10.59□□□□□ -0.71
HDAC6-230ENST00000488543 M0R135 149 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 NUPL2O15504 423 aaKnown RBP10.58□□□□□ -0.72
HDAC6-230ENST00000488543 LPLP06858 475 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ABOP16442 354 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ARF1P84077 181 aaKnown RBP10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SORDQ00796 357 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 PSG4Q00888 419 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SCRN3Q0VDG4 424 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 NRN1LQ496H8 165 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 NHLRC3Q5JS37 347 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 C9orf135Q5VTT2 229 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ZNF585AQ6P3V2 769 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 Q6ZSR3 168 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 DOK3Q7L591 496 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 OR1M1Q8NGA1 313 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 OR1F12Q8NHA8 337 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 AKR7LQ8NHP1 331 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 FAM3DQ96BQ1 224 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ZNF799Q96GE5 643 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 FAM71F1Q96KD3 344 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-230ENST00000488543 REG4Q9BYZ8 158 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 OR2H1Q9GZK4 316 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 TINAGL1Q9GZM7 467 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SDHAF2Q9NX18 166 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 OPN4Q9UHM6 478 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 A0A0U1RQV5 110 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SULT1B1O43704 296 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 MNDAP41218 407 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 GLYATL3Q5SZD4 288 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 C11orf88Q6PI97 169 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 IDO2Q6ZQW0 420 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 TMUB2Q71RG4 321 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ADGRE4PQ86SQ3 457 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 OR5AS1Q8N127 324 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SPICQ8N5J4 248 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 RELL2Q8NC24 303 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-230ENST00000488543 OR6M1Q8NGM8 313 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 TNFAIP8L1Q8WVP5 186 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SPTSSAQ969W0 71 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 SARAFQ96BY9 339 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 GPN1Q9HCN4 374 aaPredicted RBP10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ZNF175Q9Y473 711 aa10.58□□□□□ -0.72
HDAC6-230ENST00000488543 ZGRF1Q86YA3 2104 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 LOC100289279A0A1B0GTE1 492 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 hCG_1807616A0A1W2PRN6 198 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 OR6C65A6NJZ3 312 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 CCSO14618 274 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 LDLRAD4O15165 306 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 SPDEFO95238 335 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 HTR2CP28335 458 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 BDKRB2P30411 391 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 SLC6A9P48067 706 aa10.57□□□□□ -0.72
HDAC6-230ENST00000488543 SEC61A1P61619 476 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms