RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 C4orf45Q96LM5 186 aa12.84□□□□□ -0.35
SHROOM1-208ENST00000617339 TMEM14AQ9Y6G1 99 aa12.84□□□□□ -0.35
SHROOM1-208ENST00000617339 CD2P06729 351 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 MRPS10P82664 201 aaKnown RBP12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 AIMP2Q13155 320 aaKnown RBP12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 DHRS7BQ6IAN0 325 aaPredicted RBP12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 C5orf46Q6UWT4 87 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 ZNF679Q8IYX0 411 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 STOML3Q8TAV4 291 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 CCDC107Q8WV48 283 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 C11orf40Q8WZ69 217 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 ZNF251Q9BRH9 671 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 TNFSF18Q9UNG2 199 aa12.83□□□□□ -0.35
SHROOM1-208ENST00000617339 RNF222A6NCQ9 220 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 GGT3PA6NGU5 568 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 C1orf196B1AJZ1 125 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 TLX3O43711 291 aaPredicted RBP12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 GPRIN2O60269 458 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 H2AFB1P0C5Y9 115 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 PGAM2P15259 253 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 ABOP16442 354 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 HABP2Q14520 560 aaPredicted RBP12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 EIF2S3LQ2VIR3 472 aaKnown RBP12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 C3orf33Q6P1S2 294 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 ARMC10Q8N2F6 343 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 OR4S1Q8NGB4 309 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 OR51B6Q9H340 312 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 CKLFQ9UBR5 152 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 LNP1A1A4G5 178 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF14P17017 642 aaPredicted RBP12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 DHRS2Q13268 280 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 GABRG1Q8N1C3 465 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 NFAM1Q8NET5 270 aaPredicted RBP12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 OR51E1Q8TCB6 317 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 ISOC2Q96AB3 205 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 ZBTB8AQ96BR9 441 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 OR8B4Q96RC9 309 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 C20orf24Q9BUV8 137 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 MED13Q9UHV7 2174 aa12.83□□□□□ -0.36
SHROOM1-208ENST00000617339 PRR14LQ5THK1 2151 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 CEP192Q8TEP8 1941 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 LOC107986453A0A1B0GWG9 222 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 NQO2P16083 231 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 MAPK3P27361 379 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 SSR4P51571 173 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 NKAPLQ5M9Q1 402 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 RTN4RL2Q86UN3 420 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF101Q8IZC7 436 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ELP5Q8TE02 316 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 DCUN1D4Q92564 292 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 XRCC3O43542 346 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 EIF1BO60739 113 aaKnown RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 DAOP14920 347 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 EIF1P41567 113 aaKnown RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ACOT7LQ6ZUV0 252 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ABHD12BQ7Z5M8 362 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ZNF283Q8N7M2 679 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 EXD3Q8N9H8 876 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 FAM3DQ96BQ1 224 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 CLCC1Q96S66 551 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 UTP23Q9BRU9 249 aaKnown RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 PARP12Q9H0J9 701 aaKnown RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 TMEM9BQ9NQ34 198 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 LUZP4Q9P127 313 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ABI3Q9P2A4 366 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 SLC5A6Q9Y289 635 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 QDPRP09417 244 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 AKR1C4P17516 323 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ANOS1P23352 680 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 SLC25A1P53007 311 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 ACER2Q5QJU3 275 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 RNF166Q96A37 237 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 SPACA9Q96E40 222 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 CHST11Q9NPF2 352 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 RPS10P5Q9NQ39 176 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 WIF1Q9Y5W5 379 aa12.82□□□□□ -0.36
SHROOM1-208ENST00000617339 A0A1W2PPC1 479 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 CTAG2O75638 210 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 OR2F2O95006 317 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 OR2F1Q13607 317 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 GGTLC2Q14390 218 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 CLINT1Q14677 625 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 OPN5Q6U736 354 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 KMT5CQ86Y97 462 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 OR4A4PQ8NGN8 299 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 UQCC1Q9NVA1 299 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 OR52A1Q9UKL2 312 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 TMEM235A6NFC5 223 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 ARGFXA6NJG6 315 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 SYT7O43581 403 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 CPT2P23786 658 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 ADH6P28332 368 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 CCL11P51671 97 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 OR2B8PP59922 312 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 C21orf62-AS1Q17RA5 79 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 MICBQ29980 383 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 C6orf15Q6UXA7 325 aaPredicted RBP12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 UNQ9370/PRO34162Q6UXP9 181 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 FAM57BQ71RH2 274 aa12.81□□□□□ -0.36
SHROOM1-208ENST00000617339 BIVMQ86UB2 503 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 290 ms