RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 STOML3Q8TAV4 291 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 MAFIPQ8WZ33 124 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 COX14Q96I36 57 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 CNTNAP3BQ96NU0 1288 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 CST11Q9H112 138 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 SLC25A32Q9H2D1 315 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 BIN3Q9NQY0 253 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 RASL12Q9NYN1 266 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 MKL2Q9ULH7 1088 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 B9D1Q9UPM9 204 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 ZNF106Q9H2Y7 1883 aaKnown RBP10.27□□□□□ -0.76
LDLR-208ENST00000558518 ASXL3Q9C0F0 2248 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 TUBAL3A6NHL2 446 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 TTLL8A6PVC2 850 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 LINC00587B1AMM8 73 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 HCRTR1O43613 425 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 WDPCPO95876 746 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 ACTL6AO96019 429 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 SNRNP70P08621 437 aaKnown RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 RPS15AP62244 130 aaKnown RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 ATPAF1Q5TC12 328 aaPredicted RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 ADAMTSL4Q6UY14 1074 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 NAXDQ8IW45 347 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 TMIEQ8NEW7 156 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 ZNF417Q8TAU3 575 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 C14orf79Q96F83 325 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 ACKR4Q9NPB9 350 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 RPS10P5Q9NQ39 176 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 DNAJB12Q9NXW2 375 aaKnown RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 TAS2R8Q9NYW2 309 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 DHCR7Q9UBM7 475 aaKnown RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 RPH3AQ9Y2J0 694 aaPredicted RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 TMEM218A2RU14 115 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 LMX1BO60663 402 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 ZNF254O75437 659 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 GP1BAP07359 652 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 CALCBP10092 127 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 GAAP10253 952 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 ACAA2P42765 397 aaKnown RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 OR2B8PP59922 312 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 GPR18Q14330 331 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 C11orf87Q6NUJ2 197 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 LILRA6Q6PI73 481 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 BIVMQ86UB2 503 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 RTN4RL2Q86UN3 420 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 ZNF101Q8IZC7 436 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 METTL21AQ8WXB1 218 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 SLC41A2Q96JW4 573 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 SERINC2Q96SA4 455 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 KLHDC3Q9BQ90 382 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 RAB11FIP5Q9BXF6 653 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 SLC17A9Q9BYT1 436 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 OR8D2Q9GZM6 311 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 PNO1Q9NRX1 252 aaKnown RBP10.27□□□□□ -0.77
LDLR-208ENST00000558518 EPHA6Q9UF33 1036 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 RNF215Q9Y6U7 377 aa10.27□□□□□ -0.77
LDLR-208ENST00000558518 HCRTR2O43614 444 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 SULT1B1O43704 296 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 SRPX2O60687 465 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 RENP00797 406 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 CD2P06729 351 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ERCC1P07992 297 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 HOXB5P09067 269 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 CD80P33681 288 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 MRPS10P82664 201 aaKnown RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 ILF3Q12906 894 aaKnown RBP eCLIP10.26□□□□□ -0.778e-8■■■□□ 17.5
LDLR-208ENST00000558518 EBPQ15125 230 aaKnown RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 ZNF765Q7L2R6 523 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 TRAPPC6BQ86SZ2 158 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 RXFP4Q8TDU9 374 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 KTI12Q96EK9 354 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 CYYR1Q96J86 154 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 Q9N2J8 555 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 EMC9Q9Y3B6 208 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 A0A0D9SG52 128 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ADAP1O75689 374 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 KAT7O95251 611 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 LYPD3O95274 346 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 WNT11O96014 354 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ERGP11308 486 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 SERPINF1P36955 418 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 CASRP41180 1078 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 MEOX2P50222 304 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 NPY4RP50391 375 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 GPR143P51810 404 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 TAS2R19P59542 299 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 CLINT1Q14677 625 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 LY6G6FQ5SQ64 297 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 COX15Q7KZN9 410 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 YAF2Q8IY57 180 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 CAMKVQ8NCB2 501 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 ADAD2Q8NCV1 583 aaKnown RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 SEMA6DQ8NFY4 1073 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 OR13C3Q8NGS6 347 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 SLC2A12Q8TD20 617 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 WFIKKN2Q8TEU8 576 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 NPRL2Q8WTW4 380 aa10.26□□□□□ -0.77
LDLR-208ENST00000558518 FOXRED1Q96CU9 486 aaPredicted RBP10.26□□□□□ -0.77
LDLR-208ENST00000558518 INTS14Q96SY0 518 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms