RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 BNIP2Q12982 314 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 PDIA2Q13087 525 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 GK3PQ14409 553 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 EXOSC7Q15024 291 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 DGUOKQ16854 277 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SLC36A3Q495N2 470 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CEP55Q53EZ4 464 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 PIGGQ5H8A4 983 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 BRMS1LQ5PSV4 323 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RBM48Q5RL73 367 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 KPRPQ5T749 579 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 UBE2UQ5VVX9 321 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 GPR107Q5VW38 600 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TIGD3Q6B0B8 471 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RAB12Q6IQ22 244 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 PLBD1Q6P4A8 553 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TTC33Q6PID6 262 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF773Q6PK81 442 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM26Q6ZUK4 368 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 USP50Q70EL3 339 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CYS1Q717R9 158 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 LINC00523Q86TU6 105 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SLC22A16Q86VW1 577 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CTAGE3PQ8IX95 158 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CDH26Q8IXH8 852 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 DEFB107AQ8IZN7 70 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 BLIDQ8IZY5 108 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 PGAM4Q8N0Y7 254 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 C4orf33Q8N1A6 199 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ZCCHC7Q8N3Z6 543 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SFRP1Q8N474 314 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 NAT8LQ8N9F0 302 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SUMF2Q8NBJ7 301 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MDS2Q8NDY4 140 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 OR4F17Q8NGA8 305 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 OR6Q1Q8NGQ2 317 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 PDCD6IPQ8WUM4 868 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 DEDD2Q8WXF8 326 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CNDP1Q96KN2 507 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 FOPNLQ96NB1 174 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 OR4F4Q96R69 305 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MBOAT4Q96T53 435 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM246Q9BRR3 403 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM121Q9BTD3 319 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 DCUN1D5Q9BTE7 237 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CACNG6Q9BXT2 260 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 FRMD8P1Q9BZ68 369 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 COQ10BQ9H8M1 238 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 UCK1Q9HA47 277 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RPRD1BQ9NQG5 326 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 C20orf96Q9NUD7 363 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 DUS2Q9NX74 493 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 EMC3Q9P0I2 261 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SLC17A7Q9P2U7 560 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ERVK-18Q9QC07 812 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 LHX3Q9UBR4 397 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 GLS2Q9UI32 602 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MAD2L2Q9UI95 211 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 STOML2Q9UJZ1 356 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 PLLPQ9Y342 182 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CAB39Q9Y376 341 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MROH5Q6ZUA9 1318 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ROBO3Q96MS0 1386 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 DIP2BQ9P265 1576 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 LMO7Q8WWI1 1683 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TRBV2A0A0J9YWF9 115 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 A0A0J9YXY3 114 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 GSTTP1A0A1W2PQM5 241 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TCRBV3S1A0A5B6 114 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 A6NDX4 124 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 EFCAB10A6NFE3 127 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TUBAL3A6NHL2 446 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 OR6C65A6NJZ3 312 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 LEUTXA8MZ59 168 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ATP6V1G2-DDX39BF2Z307 99 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 COPEO14579 308 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ANGPT2O15123 496 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 RAD51BO15315 384 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 PSTPIP1O43586 416 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TRAF3IP2O43734 574 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 CALUO43852 315 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 NOS1APO75052 506 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 BCAS1O75363 584 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TRIM3O75382 744 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SEC22BO75396 215 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 TOM1L1O75674 476 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 UPK1BO75841 260 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 KCNK2O95069 426 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 GABARAPO95166 117 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 IFNA14P01570 189 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 HLA-DRAP01903 254 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 SLC4A1P02730 911 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 BPGMP07738 259 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 KRT7P08729 469 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 UQCRFS1P1P0C7P4 283 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ICAM2P13598 275 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 GFAPP14136 432 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF30P17039 623 aa2.3□□□□□ -2.04
VPS13C-208ENST00000559119 ARF4P18085 180 aaPredicted RBP2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms