RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZNF696Q9H7X3 374 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 ZNF226Q9NYT6 803 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 CNOT2Q9NZN8 540 aaKnown RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 EMC3Q9P0I2 261 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 KLHL9Q9P2J3 617 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 WARS2Q9UGM6 360 aaKnown RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 NPIPA1Q9UND3 350 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 MOKQ9UQ07 419 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 RCE1Q9Y256 329 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 KIAA1549Q9HCM3 1950 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 IGKV3D-15A0A087WSY6 115 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 EFCAB10A6NFE3 127 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 SLC22A31A6NKX4 558 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 ZNF724A8MTY0 619 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 KDM4EB2RXH2 506 aaPredicted RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 NPIPA2E9PIF3 369 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 C11orf98E9PRG8 122 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 NPIPA3F8WFD2 350 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 K7EM74 188 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 SMAD9O15198 467 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 CXCL13O43927 109 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 CLIC3O95833 236 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 F13BP05160 661 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 PIPP12273 146 aaPredicted RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 HIST1H1CP16403 213 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 ACVR2AP27037 513 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 CRABP1P29762 137 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 STARP49675 285 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 SUCLG1P53597 346 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 ERVK-25P63136 954 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 PMP22Q01453 160 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP39-215ENST00000481409 POU4F2Q12837 409 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 ITGADQ13349 1161 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 KRR1Q13601 381 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 ACKR1Q16570 336 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 EIF2S3LQ2VIR3 472 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 LCN1P1Q5VSP4 162 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 AADACL4Q5VUY2 407 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 DNM1P34Q6PK57 102 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 NHLRC1Q6VVB1 395 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 Q6ZPB1 254 aaPredicted RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 SLC35D2Q76EJ3 337 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 FCRLAQ7L513 359 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 ADGRE4PQ86SQ3 457 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 IQCF1Q8N6M8 205 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 LSM14AQ8ND56 463 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 RNF128Q8TEB7 428 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 FAR1Q8WVX9 515 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 TMEM45BQ96B21 275 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 LRR1Q96L50 414 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 TSPAN32Q96QS1 320 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 ENKD1Q9H0I2 346 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 TSPAN10Q9H1Z9 355 aaPredicted RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 CALHM2Q9HA72 323 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 MRPS18AQ9NVS2 196 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 PARPBPQ9NWS1 579 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 HAO2Q9NYQ3 351 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 UBAP1Q9NZ09 502 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 VSX1Q9NZR4 365 aaPredicted RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 B3GAT1Q9P2W7 334 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 ZNF346Q9UL40 294 aaKnown RBP9.08□□□□□ -0.96
USP39-215ENST00000481409 PCDHGB1Q9Y5G3 927 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 FKBP7Q9Y680 259 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 CEP295Q9C0D2 2601 aa9.08□□□□□ -0.96
USP39-215ENST00000481409 TEX13CA0A0J9YWL9 993 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 PRSS37A4D1T9 235 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 TRIM64A6NGJ6 449 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 ZNF726A6NNF4 738 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 CLCA1A8K7I4 914 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 SLC1A7O00341 560 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 TRAF3IP2O43734 574 aaPredicted RBP9.07□□□□□ -0.96
USP39-215ENST00000481409 PRKYO43930 277 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 WDR1O75083 606 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 WBP4O75554 376 aaKnown RBP9.07□□□□□ -0.96
USP39-215ENST00000481409 IGHG1P01857 330 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 CRHBPP24387 322 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 HTR1FP30939 366 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 ACVR1BP36896 505 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 POU3F1Q03052 451 aaPredicted RBP9.07□□□□□ -0.96
USP39-215ENST00000481409 C19orf57Q0VDD7 668 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 STK11Q15831 433 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 NADK2Q4G0N4 442 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 KLHL22Q53GT1 634 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 ZNF362Q5T0B9 420 aaPredicted RBP9.07□□□□□ -0.96
USP39-215ENST00000481409 THEM4Q5T1C6 240 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 EEF1A1P5Q5VTE0 462 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 OR2A2Q6IF42 318 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 CREB3L2Q70SY1 520 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 CXXC5Q7LFL8 322 aaKnown RBP9.07□□□□□ -0.96
USP39-215ENST00000481409 EGFL6Q8IUX8 553 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 UBQLNLQ8IYU4 475 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 ZNF786Q8N393 782 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 Q8NA96 180 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 SLC37A3Q8NCC5 494 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 NPEPL1Q8NDH3 523 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 OR9K2Q8NGE7 335 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 OR52E2Q8NGJ4 325 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 OR2T4Q8NH00 348 aa9.07□□□□□ -0.96
USP39-215ENST00000481409 ASB10Q8WXI3 467 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms