RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 TRIM28Q13263 835 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 GRAPQ13588 217 aa14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 SF3B3Q15393 1217 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 CNTROBQ8N137 903 aa14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 MPNDQ8N594 471 aa14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 GRAPLQ8TC17 118 aaPredicted RBP14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 DUOX1Q9NRD9 1551 aa14.51□□□□□ -0.09
LIMCH1-214ENST00000512228 SHTN1A0MZ66 631 aa14.5□□□□□ -0.09
LIMCH1-214ENST00000512228 YDJCA8MPS7 323 aa14.5□□□□□ -0.09
LIMCH1-214ENST00000512228 DDX46Q7L014 1031 aaKnown RBP14.5□□□□□ -0.09
LIMCH1-214ENST00000512228 WWC1Q8IX03 1113 aa14.5□□□□□ -0.09
LIMCH1-214ENST00000512228 KCNQ5Q9NR82 932 aa14.5□□□□□ -0.09
LIMCH1-214ENST00000512228 CREBZFQ9NS37 354 aa14.5□□□□□ -0.09
LIMCH1-214ENST00000512228 IRS4O14654 1257 aaPredicted RBP14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 GRIPAP1Q4V328 841 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 DPP8Q6V1X1 898 aaPredicted RBP14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 G2E3Q7L622 706 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 RIC3Q7Z5B4 369 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 NIM1KQ8IY84 436 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 GPR101Q96P66 508 aaPredicted RBP14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 MYD88Q99836 296 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 SEC31BQ9NQW1 1179 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 ZNRF3Q9ULT6 936 aa14.49□□□□□ -0.09
LIMCH1-214ENST00000512228 WTIPA6NIX2 430 aaPredicted RBP14.48□□□□□ -0.09
LIMCH1-214ENST00000512228 GPSM2P81274 684 aa14.48□□□□□ -0.09
LIMCH1-214ENST00000512228 POLLQ9UGP5 575 aa14.48□□□□□ -0.09
LIMCH1-214ENST00000512228 TRAF5O00463 557 aa14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 RAD17O75943 681 aa14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 HSPA1AP0DMV8 641 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 HSPA1BP0DMV9 641 aaKnown RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 HIRAP54198 1017 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 KIAA2012Q0VF49 1180 aa14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 PNMA8AQ86V59 439 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 ZBTB38Q8NAP3 1195 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 CCDC85AQ96PX6 553 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 SALL2Q9Y467 1007 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-214ENST00000512228 LRRC37AA6NMS7 1700 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 RIMBP2O15034 1052 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 IGKV5-2P06315 115 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 VEGFBP49765 207 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 GMPSP49915 693 aaPredicted RBP14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 CST9Q5W186 159 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 DLK2Q6UY11 383 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 METTL22Q9BUU2 404 aaPredicted RBP14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 VPS33BQ9H267 617 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 GPRC5DQ9NZD1 345 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 NSFL1CQ9UNZ2 370 aaKnown RBP14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 MAP3K2Q9Y2U5 619 aa14.46□□□□□ -0.09
LIMCH1-214ENST00000512228 POLR2AP24928 1970 aaKnown RBP14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 ZNF316A6NFI3 1004 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 TMEM88BA6NKF7 163 aa14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 RPS8P62241 208 aaKnown RBP14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 CCDC27Q2M243 656 aa14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 SPINK5Q9NQ38 1064 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 ZBTB12Q9Y330 459 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 PCNTO95613 3336 aa14.45□□□□□ -0.1
LIMCH1-214ENST00000512228 PI4KAP2A4QPH2 592 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 CALD1Q05682 793 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 GOLGA2Q08379 1002 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 DOK7Q18PE1 504 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 CCDC30Q5VVM6 783 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 PI4KAP1Q8N8J0 262 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 SUPT20HQ8NEM7 779 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 TMX4Q9H1E5 349 aaPredicted RBP14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 DBNDD1Q9H9R9 158 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 MRS2Q9HD23 443 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 CNTNAP1P78357 1384 aa14.44□□□□□ -0.1
LIMCH1-214ENST00000512228 SCN9AQ15858 1988 aa14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 EGFRP00533 1210 aa14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 PCCAP05165 728 aaPredicted RBP14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 LMOD1P29536 600 aaPredicted RBP14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 CWF19L2Q2TBE0 894 aaKnown RBP14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 CIAPIN1Q6FI81 312 aa14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 KSR2Q6VAB6 950 aa14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 CCDC191Q8NCU4 936 aa14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 TBC1D16Q8TBP0 767 aa14.43□□□□□ -0.1
LIMCH1-214ENST00000512228 SLC4A2P04920 1241 aa14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 WASHC4Q2M389 1173 aa14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 TWISTNBQ3B726 338 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 USP50Q70EL3 339 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 TRPM4Q8TD43 1214 aa14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 CWC25Q9NXE8 425 aaPredicted RBP14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 CNOT7Q9UIV1 285 aaKnown RBP14.42□□□□□ -0.1
LIMCH1-214ENST00000512228 C6orf229H3BNL8 230 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 PSMD14O00487 310 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 PDE8AO60658 829 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 VAMP4O75379 141 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 SAMD7Q7Z3H4 446 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 ADARB2Q9NS39 739 aaKnown RBP14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 PGAP2Q9UHJ9 254 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 RTL9Q8NET4 1388 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 TRPM7Q96QT4 1865 aa14.41□□□□□ -0.1
LIMCH1-214ENST00000512228 RASSF10A6NK89 507 aa14.4□□□□□ -0.1
LIMCH1-214ENST00000512228 FOXN1O15353 648 aa14.4□□□□□ -0.1
LIMCH1-214ENST00000512228 DEFB115Q30KQ5 88 aa14.4□□□□□ -0.1
LIMCH1-214ENST00000512228 TMC4Q7Z404 712 aa14.4□□□□□ -0.1
LIMCH1-214ENST00000512228 TTLL11Q8NHH1 800 aa14.4□□□□□ -0.1
LIMCH1-214ENST00000512228 GLIS2Q9BZE0 524 aaPredicted RBP14.4□□□□□ -0.1
LIMCH1-214ENST00000512228 NEURL1BA8MQ27 555 aa14.39□□□□□ -0.11
LIMCH1-214ENST00000512228 H7C1W4 665 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms