RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 EIF5P55010 431 aaKnown RBP11.32□□□□□ -0.6
CAPN3-201ENST00000318023 PDE3AQ14432 1141 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 NLGN1Q8N2Q7 840 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 SLC16A10Q8TF71 515 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 TIGD1Q96MW7 591 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 TTC12Q9H892 705 aaPredicted RBP11.32□□□□□ -0.6
CAPN3-201ENST00000318023 NIP7Q9Y221 180 aaKnown RBP eCLIP11.32□□□□□ -0.6
CAPN3-201ENST00000318023 ATP5J2-PTCD1G3V325 749 aa11.31□□□□□ -0.6
CAPN3-201ENST00000318023 CHL1O00533 1208 aa11.31□□□□□ -0.6
CAPN3-201ENST00000318023 RC3H1Q5TC82 1133 aaKnown RBP11.31□□□□□ -0.6
CAPN3-201ENST00000318023 XAGE3Q8WTP9 111 aa11.31□□□□□ -0.6
CAPN3-201ENST00000318023 CFAP44Q96MT7 982 aa11.31□□□□□ -0.6
CAPN3-201ENST00000318023 SGIP1Q9BQI5 828 aa11.31□□□□□ -0.6
CAPN3-201ENST00000318023 SNX21Q969T3 373 aa11.31□□□□□ -0.6
CAPN3-201ENST00000318023 PHAXQ9H814 394 aaKnown RBP11.31□□□□□ -0.6
CAPN3-201ENST00000318023 PRPF40AO75400 957 aaKnown RBP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 SLFN14P0C7P3 912 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 EXOSC9Q06265 439 aaKnown RBP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 PKP1Q13835 747 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 TEX13AQ9BXU3 409 aaPredicted RBP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 MYH14Q7Z406 1995 aaKnown RBP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 ZNF526Q8TF50 670 aaPredicted RBP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 LMBRD1Q9NUN5 540 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 NARFQ9UHQ1 456 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 C4BP0C0L5 1744 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 DCAF8L1A6NGE4 600 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 SERPINB2P05120 415 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 GNAI1P63096 354 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 GPT2Q8TD30 523 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 ZNF622Q969S3 477 aaKnown RBP eCLIP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 CCDC85AQ96PX6 553 aaPredicted RBP11.3□□□□□ -0.6
CAPN3-201ENST00000318023 SETDB2Q96T68 719 aa11.3□□□□□ -0.6
CAPN3-201ENST00000318023 CCDC66A2RUB6 948 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 RIOK3O14730 519 aaKnown RBP11.29□□□□□ -0.6
CAPN3-201ENST00000318023 SYNE4Q8N205 404 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 TMEM63CQ9P1W3 806 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 KCPQ6ZWJ8 1503 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 K7ELQ4 463 aaPredicted RBP11.29□□□□□ -0.6
CAPN3-201ENST00000318023 IL6STP40189 918 aaPredicted RBP11.29□□□□□ -0.6
CAPN3-201ENST00000318023 KIF6Q6ZMV9 814 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 NBPF5PQ86XG9 351 aaPredicted RBP11.29□□□□□ -0.6
CAPN3-201ENST00000318023 PIBF1Q8WXW3 757 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 RWDD1Q9H446 243 aaPredicted RBP11.29□□□□□ -0.6
CAPN3-201ENST00000318023 NSFL1CQ9UNZ2 370 aaKnown RBP11.29□□□□□ -0.6
CAPN3-201ENST00000318023 RREB1Q92766 1687 aa11.29□□□□□ -0.6
CAPN3-201ENST00000318023 SLC20A2Q08357 652 aa11.28□□□□□ -0.6
CAPN3-201ENST00000318023 DPEP1P16444 411 aa11.28□□□□□ -0.6
CAPN3-201ENST00000318023 TRMT2AQ8IZ69 625 aaKnown RBP11.28□□□□□ -0.6
CAPN3-201ENST00000318023 OGFRQ9NZT2 677 aa11.28□□□□□ -0.6
CAPN3-201ENST00000318023 SCN11AQ9UI33 1791 aa11.28□□□□□ -0.6
CAPN3-201ENST00000318023 TWISTNBQ3B726 338 aaPredicted RBP11.28□□□□□ -0.6
CAPN3-201ENST00000318023 LRSAM1Q6UWE0 723 aa11.28□□□□□ -0.6
CAPN3-201ENST00000318023 CAMTA2O94983 1202 aa11.27□□□□□ -0.6
CAPN3-201ENST00000318023 RNF216Q9NWF9 866 aaPredicted RBP11.27□□□□□ -0.6
CAPN3-201ENST00000318023 ADRA2BP18089 450 aa11.27□□□□□ -0.61
CAPN3-201ENST00000318023 FOXD4L5Q5VV16 416 aaPredicted RBP11.27□□□□□ -0.61
CAPN3-201ENST00000318023 G2E3Q7L622 706 aa11.27□□□□□ -0.61
CAPN3-201ENST00000318023 SLC51AQ86UW1 340 aa11.27□□□□□ -0.61
CAPN3-201ENST00000318023 FOXD4L4Q8WXT5 416 aaPredicted RBP11.27□□□□□ -0.61
CAPN3-201ENST00000318023 ANKRD7Q92527 254 aa11.27□□□□□ -0.61
CAPN3-201ENST00000318023 KIF2CQ99661 725 aa11.27□□□□□ -0.61
CAPN3-201ENST00000318023 IFT57Q9NWB7 429 aa11.27□□□□□ -0.61
CAPN3-201ENST00000318023 SLC4A2P04920 1241 aa11.26□□□□□ -0.61
CAPN3-201ENST00000318023 YBX3P16989 372 aaKnown RBP eCLIP11.26□□□□□ -0.61
CAPN3-201ENST00000318023 GABPB1Q06547 395 aaPredicted RBP11.26□□□□□ -0.61
CAPN3-201ENST00000318023 POLRMTO00411 1230 aaKnown RBP11.26□□□□□ -0.61
CAPN3-201ENST00000318023 RIC3Q7Z5B4 369 aa11.26□□□□□ -0.61
CAPN3-201ENST00000318023 FEZ1Q99689 392 aa11.26□□□□□ -0.61
CAPN3-201ENST00000318023 C5P01031 1676 aa11.26□□□□□ -0.61
CAPN3-201ENST00000318023 MYCNP04198 464 aaPredicted RBP11.26□□□□□ -0.61
CAPN3-201ENST00000318023 FKBP5Q13451 457 aaPredicted RBP11.26□□□□□ -0.61
CAPN3-201ENST00000318023 PDIA6Q15084 440 aa11.26□□□□□ -0.61
CAPN3-201ENST00000318023 CNBD1Q8NA66 436 aa11.26□□□□□ -0.61
CAPN3-201ENST00000318023 CARMIL3Q8ND23 1372 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 LY75O60449 1722 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 OLFM4Q6UX06 510 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 TMX1Q9H3N1 280 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 DLG5Q8TDM6 1919 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 F6X3S4 739 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 HCLS1P14317 486 aaPredicted RBP11.25□□□□□ -0.61
CAPN3-201ENST00000318023 NAA30Q147X3 362 aaPredicted RBP11.25□□□□□ -0.61
CAPN3-201ENST00000318023 TERF2Q15554 542 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 SLC4A10Q6U841 1118 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 MRC1P22897 1456 aa11.25□□□□□ -0.61
CAPN3-201ENST00000318023 A0A087WZG4 1122 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 ARHGAP27Q6ZUM4 889 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 STK31Q9BXU1 1019 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 KCNG1Q9UIX4 513 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 USP25Q9UHP3 1055 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 HDAC5Q9UQL6 1122 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 CEP350Q5VT06 3117 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 PCNTO95613 3336 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 TULP2O00295 520 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 NCBP1Q09161 790 aaKnown RBP11.24□□□□□ -0.61
CAPN3-201ENST00000318023 PRR5LQ6MZQ0 368 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 CLEC17AQ6ZS10 378 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 C2CD5Q86YS7 1000 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 ZNF652Q9Y2D9 606 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 PAPPAQ13219 1627 aa11.24□□□□□ -0.61
CAPN3-201ENST00000318023 ZNF853P0CG23 659 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms