RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PPIP5K1Q6PFW1 1433 aa12.39□□□□□ -0.43
CD44-201ENST00000263398 MPHOSPH10O00566 681 aaKnown RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 MTIF2P46199 727 aaKnown RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 PRIM1P49642 420 aaKnown RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 AMPD3Q01432 767 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 DNM1Q05193 864 aaKnown RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 TDRD12Q587J7 1177 aaKnown RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 AEBP2Q6ZN18 517 aaPredicted RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 CCDC186Q7Z3E2 898 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 LUZP1Q86V48 1076 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 CCDC144CPQ8IYA2 1237 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 EXOC5O00471 708 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 ANO6Q4KMQ2 910 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 FBXO3Q9UK99 471 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 NPC1L1Q9UHC9 1359 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 A2MP01023 1474 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 SHTN1A0MZ66 631 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 LDHCP07864 332 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 ZBTB43O43298 467 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 BMP15O95972 392 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 PRKCSHP14314 528 aaPredicted RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 IL15P40933 162 aaPredicted RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 GNG11P61952 73 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 AKAP4Q5JQC9 854 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 SLF2Q8IX21 1173 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 TMTC2Q8N394 836 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 JARID2Q92833 1246 aaPredicted RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 PRDM10Q9NQV6 1147 aa12.38□□□□□ -0.43
CD44-201ENST00000263398 EIF2AK4Q9P2K8 1649 aaKnown RBP12.38□□□□□ -0.43
CD44-201ENST00000263398 PDE4BQ07343 736 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 BMS1Q14692 1282 aaKnown RBP12.37□□□□□ -0.43
CD44-201ENST00000263398 MTHFSDQ2M296 383 aaKnown RBP12.37□□□□□ -0.43
CD44-201ENST00000263398 ISM2Q6H9L7 571 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 LMBR1LQ6UX01 489 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 RAB11FIP4Q86YS3 637 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 PHACTR3Q96KR7 559 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 LRRC2Q9BYS8 371 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 SKILP12757 684 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 PPP4R3BQ5MIZ7 849 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 CALCOCO1Q9P1Z2 691 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 ABCC2Q92887 1545 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 TSPY2A6NKD2 308 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 NBPF7P0C2Y1 421 aaPredicted RBP12.37□□□□□ -0.43
CD44-201ENST00000263398 POTEJP0CG39 1038 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 IDEP14735 1019 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 UBASH3AP57075 661 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 TNIP1Q15025 636 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 CALML4Q96GE6 196 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 ALG1Q9BT22 464 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 TNRQ92752 1358 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 FLT4P35916 1363 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 USP26Q9BXU7 913 aa12.37□□□□□ -0.43
CD44-201ENST00000263398 SOS1Q07889 1333 aaPredicted RBP12.36□□□□□ -0.43
CD44-201ENST00000263398 N4BP3O15049 544 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 POLR3GO15318 223 aaPredicted RBP12.36□□□□□ -0.43
CD44-201ENST00000263398 WTAPQ15007 396 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 Q6ZUG5 572 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 ZFYVE9O95405 1425 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 ZBTB7BO15156 539 aaPredicted RBP12.36□□□□□ -0.43
CD44-201ENST00000263398 CHMLP26374 656 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 ATP2B3Q16720 1220 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 CCDC96Q2M329 555 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 ZNF830Q96NB3 372 aaPredicted RBP12.36□□□□□ -0.43
CD44-201ENST00000263398 TEX14Q8IWB6 1497 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 ANKRD62A6NC57 917 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 AK2P54819 239 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 FAM114A1Q8IWE2 563 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 ZGPATQ8N5A5 531 aaKnown RBP12.36□□□□□ -0.43
CD44-201ENST00000263398 KRT23Q9C075 422 aa12.36□□□□□ -0.43
CD44-201ENST00000263398 UBA5Q9GZZ9 404 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 UHRF1BP1LA0JNW5 1464 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 NMIQ13287 307 aaPredicted RBP12.35□□□□□ -0.43
CD44-201ENST00000263398 ALS2CR12Q96Q35 445 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 NAA15Q9BXJ9 866 aaKnown RBP12.35□□□□□ -0.43
CD44-201ENST00000263398 CNNM2Q9H8M5 875 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 ZRANB1Q9UGI0 708 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 BAG3O95817 575 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 SPAG1Q07617 926 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 KRT24Q2M2I5 525 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 CADPS2Q86UW7 1296 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 DNAJC25Q9H1X3 360 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 TTC12Q9H892 705 aaPredicted RBP12.35□□□□□ -0.43
CD44-201ENST00000263398 KAT14Q9H8E8 782 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 COL17A1Q9UMD9 1497 aaPredicted RBP12.35□□□□□ -0.43
CD44-201ENST00000263398 NPATQ14207 1427 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 DESP17661 470 aa12.35□□□□□ -0.43
CD44-201ENST00000263398 PA2G4Q9UQ80 394 aaKnown RBP12.35□□□□□ -0.43
CD44-201ENST00000263398 CFAP65Q6ZU64 1925 aaKnown RBP12.35□□□□□ -0.43
CD44-201ENST00000263398 SSR1P43307 286 aaKnown RBP12.34□□□□□ -0.43
CD44-201ENST00000263398 TYRO3Q06418 890 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 SMARCC1Q92922 1105 aaPredicted RBP12.34□□□□□ -0.43
CD44-201ENST00000263398 TUBB4AP04350 444 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 ESR2Q92731 530 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 EZRP15311 586 aaKnown RBP12.34□□□□□ -0.43
CD44-201ENST00000263398 SLC39A6Q13433 755 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 CCDC40Q4G0X9 1142 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 EHBP1Q8NDI1 1231 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 RMND1Q9NWS8 449 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 RAD50Q92878 1312 aa12.34□□□□□ -0.43
CD44-201ENST00000263398 CHRNA2Q15822 529 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms