RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TMEM234Q8WY98 164 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 PROX1Q92786 737 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 TUBGCP3Q96CW5 907 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 ZHX1-C8orf76Q96EF9 292 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 PPP3R2Q96LZ3 170 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 PIMREGQ9BSJ6 248 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 TRMOQ9BU70 441 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 FKRPQ9H9S5 495 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 ARMCX1Q9P291 453 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 TMED7Q9Y3B3 224 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 WDR45Q9Y484 360 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 PMF1-BGLAPU3KQ54 211 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 A0A096LPE4 126 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 A0A1W2PPZ6 126 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 SH3PXD2BA1X283 911 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 FGF4P08620 206 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 OR4A8P0C604 315 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 MAPK1P28482 360 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 TACR3P29371 465 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 CALCRP30988 508 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 RBMXP38159 391 aaKnown RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 APOBEC1P41238 236 aaKnown RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 MAGEA8P43361 318 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC16A1P53985 500 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 NME5P56597 212 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 CEACAM7Q14002 265 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 CCNIQ14094 377 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC17A1Q14916 467 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 PDK3Q15120 406 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 SYPL1Q16563 259 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 GPAT3Q53EU6 434 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 C12orf54Q6X4T0 127 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 RINLQ6ZS11 566 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 RNF165Q6ZSG1 346 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 GRINAQ7Z429 371 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 GPAT4Q86UL3 456 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 MEX3DQ86XN8 651 aaKnown RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 ZIC4Q8N9L1 334 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 PNPT1Q8TCS8 783 aaKnown RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC25A43Q8WUT9 341 aaPredicted RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 ARL8AQ96BM9 186 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 ROPN1LQ96C74 230 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 AURKBQ96GD4 344 aaPredicted RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 ALKBH3Q96Q83 286 aaPredicted RBP7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 SNX18Q96RF0 628 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 KRTAP17-1Q9BYP8 105 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 CA10Q9NS85 328 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 ATAD3AQ9NVI7 634 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 TMEM181Q9P2C4 612 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 OSGIN1Q9UJX0 560 aa7.52□□□□□ -1.21
SHKBP1-220ENST00000599716 DYSFO75923 2080 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 GPR171O14626 319 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 ITM2AO43736 263 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 NPHS1O60500 1241 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SCN2BO60939 215 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SEC14L2O76054 403 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 CHRM4P08173 479 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 IGFBP1P08833 259 aaPredicted RBP7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 GKN3PP0CG01 181 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF23P17027 643 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 PRPS1L1P21108 318 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SERPINF1P36955 418 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 RPL3P39023 403 aaKnown RBP7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SELENOPP49908 381 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 PRPS1P60891 318 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 NAA20P61599 178 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SNRPD2P62316 118 aaKnown RBP7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 KCNJ10P78508 379 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 H3F3AP84243 136 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 OR7A5Q15622 319 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 ADIPOQQ15848 244 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 TBRG1Q3YBR2 411 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 OTUD3Q5T2D3 398 aaPredicted RBP7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 OR7E24Q6IFN5 339 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 AAED1Q7RTV5 226 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 CARM1Q86X55 608 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 KDM8Q8N371 416 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SVOPLQ8N434 492 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 ARFGAP2Q8N6H7 521 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 OR9K2Q8NGE7 335 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 MOAP1Q96BY2 351 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 APOPT1Q96IL0 206 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 PKNOX2Q96KN3 472 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 PRPF18Q99633 342 aaKnown RBP7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 TPK1Q9H3S4 243 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 NARFLQ9H6Q4 476 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 LPAR2Q9HBW0 351 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 RLIMQ9NVW2 624 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 ADPRHL2Q9NX46 363 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SEC14L4Q9UDX3 406 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 DCTN4Q9UJW0 460 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 AMDHD2Q9Y303 409 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 HDGFL3Q9Y3E1 203 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 SPIN1Q9Y657 262 aaPredicted RBP7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 FKBP7Q9Y680 259 aa7.51□□□□□ -1.21
SHKBP1-220ENST00000599716 WDR91A4D1P6 747 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF503-AS2A6NEH8 195 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 DUXAA6NLW8 204 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 HMGN4O00479 90 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 LILRA1O75019 489 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms