RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 SLC16A1P53985 500 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MRPS10P82664 201 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 NOGQ13253 232 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 SUZ12Q15022 739 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 DUSP5Q16690 384 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 ZNF613Q6PF04 617 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 THSD4Q6ZMP0 1018 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MTSS1LQ765P7 747 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 NLRC3Q7RTR2 1065 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR6V1Q8N148 313 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR52E1Q8NGJ3 308 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR13C2Q8NGS9 318 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR2T4Q8NH00 348 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 CEP76Q8TAP6 659 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 THAP4Q8WY91 577 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MRPL48Q96GC5 212 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 MSANTD3Q96H12 275 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MACROD1Q9BQ69 325 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MRI1Q9BV20 369 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 GSDMCQ9BYG8 508 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 ENKD1Q9H0I2 346 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR51V1Q9H2C8 321 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 WDR26Q9H7D7 661 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 NRIP3Q9NQ35 241 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 NPDC1Q9NQX5 325 aaPredicted RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 FBXL3Q9UKT7 428 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 PRELID1Q9Y255 219 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 HCFC2Q9Y5Z7 792 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 SCN2AQ99250 2005 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 A0A1W2PPL8 197 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 A0A1W2PRG6 482 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 PRR19A6NJB7 356 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 RFXAPO00287 272 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 GPRIN2O60269 458 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 PTP4A3O75365 173 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 AK1P00568 194 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 GIPP09681 153 aaPredicted RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 IFI6P09912 130 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR2T7P0C7T2 308 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 LAMP2P13473 410 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 HOXB3P14651 431 aaPredicted RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 ZNF250P15622 560 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 PSMB1P20618 241 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 ZP3P21754 424 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 NOS3P29474 1203 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 SLC6A6P31641 620 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 BLVRAP53004 296 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 VSX2P58304 361 aaPredicted RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 RPL6Q02878 288 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 CRMP1Q14194 572 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 ZNF234Q14588 700 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MRPL2Q5T653 305 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 OLFML2AQ68BL7 652 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 RPL22L1Q6P5R6 122 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 RPTNQ6XPR3 784 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 FTMTQ8N4E7 242 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR11G2Q8NGC1 345 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR4D9Q8NGE8 314 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 OR2T27Q8NH04 317 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 NT5CQ8TCD5 201 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 LGALS14Q8TCE9 139 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 RBPMSQ93062 196 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 MS4A3Q96HJ5 214 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 ZNF559Q9BR84 538 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 UTP23Q9BRU9 249 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 TMPRSS13Q9BYE2 586 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 PPA2Q9H2U2 334 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 METTL17Q9H7H0 456 aaPredicted RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 ZNF224Q9NZL3 707 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MOSPD1Q9UJG1 213 aa8.09□□□□□ -1.11
TDP1-204ENST00000545686 MRPS7Q9Y2R9 242 aaKnown RBP8.09□□□□□ -1.11
TDP1-204ENST00000545686 EML5Q05BV3 1969 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 CIB4A0PJX0 185 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 OR6C65A6NJZ3 312 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 PDCD5O14737 125 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 TPPPO94811 219 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 SYPP08247 313 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 HNRNPA1P09651 372 aaKnown RBP eCLIP8.08□□□□□ -1.12
TDP1-204ENST00000545686 LINC00271P0C7V0 271 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 FUT1P19526 365 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 PEBP1P30086 187 aaKnown RBP8.08□□□□□ -1.12
TDP1-204ENST00000545686 SSTR2P30874 369 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 PTGS2P35354 604 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 RBM34P42696 430 aaKnown RBP8.08□□□□□ -1.12
TDP1-204ENST00000545686 PRMT2P55345 433 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 BTN3A2P78410 334 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 CRYZQ08257 329 aaKnown RBP8.08□□□□□ -1.12
TDP1-204ENST00000545686 ILF3Q12906 894 aaKnown RBP eCLIP8.08□□□□□ -1.122e-6■□□□□ 9.3
TDP1-204ENST00000545686 KRT33BQ14525 404 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 GPR68Q15743 365 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 RPE65Q16518 533 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 RNASE12Q5GAN4 147 aaKnown RBP8.08□□□□□ -1.12
TDP1-204ENST00000545686 NHLRC3Q5JS37 347 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 DCST2Q5T1A1 773 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 ZCCHC12Q6PEW1 402 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 UNQ9370/PRO34162Q6UXP9 181 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 SLC39A5Q6ZMH5 540 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 UBE2Q1Q7Z7E8 422 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 BMPERQ8N8U9 685 aa8.08□□□□□ -1.12
TDP1-204ENST00000545686 GALNT11Q8NCW6 608 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms