RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 WDR91A4D1P6 747 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 H7C1Q1 480 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 ANKRD28O15084 1053 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 EFNA2O43921 213 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 GCM2O75603 506 aaPredicted RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 UQCRC2P22695 453 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 FKBP2P26885 142 aaKnown RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 CHI3L1P36222 383 aaPredicted RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 ANXA11P50995 505 aaKnown RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 TXNL4AP83876 142 aaKnown RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 ITGADQ13349 1161 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 TIGD2Q4W5G0 525 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 ALKBH2Q6NS38 261 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 Q6ZT83 130 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 NUFIP2Q7Z417 695 aaKnown RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 CLECL1Q8IZS7 167 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 TRIML2Q8N7C3 387 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 ZHX1-C8orf76Q96EF9 292 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 PPP1R36Q96LQ0 422 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 OR5B2Q96R09 309 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 THUMPD3Q9BV44 507 aaKnown RBP11.67□□□□□ -0.54
RTN3-213ENST00000543552 OR51I1Q9H343 314 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 ACER3Q9NUN7 267 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 EMC3Q9P0I2 261 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 MKLN1Q9UL63 735 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 WDR45Q9Y484 360 aa11.67□□□□□ -0.54
RTN3-213ENST00000543552 ROS1P08922 2347 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 NUP214P35658 2090 aaPredicted RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 ZNF724A8MTY0 619 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 ITM2AO43736 263 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 KIAA0513O60268 411 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 CYTIPO60759 359 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 DNAJA2O60884 412 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 UGT2B17O75795 530 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 CNOT4O95628 575 aaKnown RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 CD3EP07766 207 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 UBTFL6P0CB48 400 aaPredicted RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 LBPP18428 481 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 APOBEC1P41238 236 aaKnown RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 OR3A2P47893 321 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 SLC1A6P48664 564 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 RPS4XP62701 263 aaKnown RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 ZNF844Q08AG5 666 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 LRRC74AQ0VAA2 488 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 RASGEF1BQ0VAM2 473 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 MERTKQ12866 999 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 CAPRIN1Q14444 709 aaKnown RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 ETFDHQ16134 617 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 SYT14P1Q58G82 188 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 HEPHL1Q6MZM0 1159 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 ADAM5Q6NVV9 412 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 BHLHA15Q7RTS1 189 aaPredicted RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 ZNF563Q8TA94 476 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 NUDT8Q8WV74 236 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 XAGE5Q8WWM1 108 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 AKAP1Q92667 903 aaKnown RBP eCLIP11.66□□□□□ -0.54
RTN3-213ENST00000543552 FBXW5Q969U6 566 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 NEURL3Q96EH8 262 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 SMR3AQ99954 134 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 PSD2Q9BQI7 771 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 CENPHQ9H3R5 247 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 SERHL2Q9H4I8 314 aa11.66□□□□□ -0.54
RTN3-213ENST00000543552 ZNF701Q9NV72 531 aaPredicted RBP11.66□□□□□ -0.54
RTN3-213ENST00000543552 IGHV3-15A0A0B4J1V0 119 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 A0A1W2PNR3 127 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 ESPNB1AK53 854 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 E9PBE3 544 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 SULT2B1O00204 365 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 CLOCKO15516 846 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 DNPH1O43598 174 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 FCMRO60667 390 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 CPSF4O95639 269 aaKnown RBP11.65□□□□□ -0.54
RTN3-213ENST00000543552 ADAP00813 363 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 OR12D1P0DN82 309 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 S100A3P33764 101 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 DIO1P49895 249 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 ATP5J2P56134 94 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 SESN3P58005 492 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 STX3Q13277 289 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 GNA13Q14344 377 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 TAB1Q15750 504 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 SAXO2Q658L1 398 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 TNFAIP8L2Q6P589 184 aaPredicted RBP11.65□□□□□ -0.54
RTN3-213ENST00000543552 Q71RC1 249 aaPredicted RBP11.65□□□□□ -0.54
RTN3-213ENST00000543552 GALNT5Q7Z7M9 940 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 ANKRD46Q86W74 232 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 ZNF100Q8IYN0 542 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 ZNF619Q8N2I2 560 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 IGFBPL1Q8WX77 278 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 ROPN1LQ96C74 230 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 MUCL1Q96DR8 90 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 TRMT61AQ96FX7 289 aaKnown RBP11.65□□□□□ -0.54
RTN3-213ENST00000543552 NUF2Q9BZD4 464 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 KCNK9Q9NPC2 374 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 EXOSC3Q9NQT5 275 aaKnown RBP11.65□□□□□ -0.54
RTN3-213ENST00000543552 MARCOQ9UEW3 520 aaPredicted RBP11.65□□□□□ -0.54
RTN3-213ENST00000543552 HAO1Q9UJM8 370 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 LIPT1Q9Y234 373 aa11.65□□□□□ -0.54
RTN3-213ENST00000543552 GPR171O14626 319 aa11.64□□□□□ -0.55
RTN3-213ENST00000543552 SMAD7O15105 426 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms