RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 NARSO43776 548 aaKnown RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 PRICKLE3O43900 615 aaPredicted RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 C8AP07357 584 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SLC35G4P0C7Q5 338 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 DCTDP32321 178 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 GAS1P54826 345 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 OR4C11Q6IEV9 310 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SSX6Q7RTT6 188 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 HOMEZQ8IX15 550 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ZDHHC1Q8WTX9 485 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SCMH1Q96GD3 660 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 KLHL42Q9P2K6 505 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SCP2D1Q9UJQ7 156 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 hCG_1807616A0A1W2PRN6 198 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 CENPAP49450 140 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 BTG1P62324 171 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ELOAQ14241 798 aaKnown RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 RPE65Q16518 533 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 CD276Q5ZPR3 534 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 VASNQ6EMK4 673 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 MTSS1LQ765P7 747 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 CDK20Q8IZL9 346 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SMPDL3BQ92485 455 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 CNRIP1Q96F85 164 aaPredicted RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 SORCS2Q96PQ0 1159 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 OR1F2PQ96R84 312 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 MS4A8Q9BY19 250 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 NOX3Q9HBY0 568 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 TAS2R10Q9NYW0 307 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 PHF11Q9UIL8 331 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ZNF346Q9UL40 294 aaKnown RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 OR10H1Q9Y4A9 318 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 BACE2Q9Y5Z0 518 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ARRDC5A6NEK1 342 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 RIIAD1A6NNX1 92 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 LPLP06858 475 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 RBMS1P29558 406 aaKnown RBP10.54□□□□□ -0.72
LDLR-208ENST00000558518 ZP1P60852 638 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ERVK-25P63136 954 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 TEAD2Q15562 447 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SLC36A2Q495M3 483 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 TMEM88Q6PEY1 159 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 THSD4Q6ZMP0 1018 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ZNF793Q6ZN11 406 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 SLITRK4Q8IW52 837 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 OR52E2Q8NGJ4 325 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 FBXL3Q9UKT7 428 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 HS3ST2Q9Y278 367 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 ZNF780BQ9Y6R6 833 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 DOCK9Q9BZ29 2069 aa10.54□□□□□ -0.72
LDLR-208ENST00000558518 A0A1W2PQ45 241 aaPredicted RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 RPS10-NUDT3A0A1W2PQS6 291 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 A0A1W2PQY0 241 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 LRRC72A6NJI9 287 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 PEX14O75381 377 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 IFNA16P05015 189 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 RRASP10301 218 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 C6P13671 934 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 HTR1FP30939 366 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 RPS27P42677 84 aaKnown RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 PRR5P85299 388 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 AADACL4Q5VUY2 407 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 SLC6A19Q695T7 634 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 HEPHL1Q6MZM0 1159 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 KLHDC8AQ8IYD2 350 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 OR5M1Q8NGP8 315 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ADAMTS14Q8WXS8 1223 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ACOT12Q8WYK0 555 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 DVL3Q92997 716 aaPredicted RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 PEX11GQ96HA9 241 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ZDHHC5Q9C0B5 715 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 POT1Q9NUX5 634 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 UNC119BA6NIH7 251 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ANXA2P2A6NMY6 339 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 GOSR2O14653 212 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 IMPA2O14732 288 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 GREM1O60565 184 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 CBX7O95931 251 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 MAS1P04201 325 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 HMGN1P05114 100 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 CSNK2A2P19784 350 aaPredicted RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 ERVK-21P61565 698 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 MESP2Q0VG99 397 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 FUT5Q11128 374 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 C4orf46Q504U0 113 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ZNF805Q5CZA5 627 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 UBE2Q1Q7Z7E8 422 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ZNF547Q8IVP9 402 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 CMTM4Q8IZR5 234 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 HDDC3Q8N4P3 179 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ACOT11Q8WXI4 607 aaPredicted RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 WNT2BQ93097 391 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 KCTD12Q96CX2 325 aaKnown RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 PTCHD1Q96NR3 888 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 AIFM2Q9BRQ8 373 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 IL21Q9HBE4 155 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 A0A087WV48 116 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 A0A1W2PR48 441 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms