RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 CWC25Q9NXE8 425 aaPredicted RBP23.86■■□□□ 1.41
VPS33A-205ENST00000541169 TRMT112Q9UI30 125 aaKnown RBP23.86■■□□□ 1.41
VPS33A-205ENST00000541169 SH3TC1Q8TE82 1336 aa23.85■■□□□ 1.41
VPS33A-205ENST00000541169 H0YIN7 160 aa23.85■■□□□ 1.41
VPS33A-205ENST00000541169 SLC10A5Q5PT55 438 aa23.85■■□□□ 1.41
VPS33A-205ENST00000541169 ZBTB38Q8NAP3 1195 aaPredicted RBP23.84■■□□□ 1.41
VPS33A-205ENST00000541169 API5Q9BZZ5 524 aaKnown RBP23.84■■□□□ 1.41
VPS33A-205ENST00000541169 KLRG2A4D1S0 409 aaPredicted RBP23.83■■□□□ 1.41
VPS33A-205ENST00000541169 ATP5J2-PTCD1G3V325 749 aa23.83■■□□□ 1.41
VPS33A-205ENST00000541169 PXDNLA1KZ92 1463 aa23.82■■□□□ 1.4
VPS33A-205ENST00000541169 FAM177BA6PVY3 158 aa23.82■■□□□ 1.4
VPS33A-205ENST00000541169 BCL2L13Q9BXK5 485 aa23.82■■□□□ 1.4
VPS33A-205ENST00000541169 SRCAPQ6ZRS2 3230 aa23.82■■□□□ 1.4
VPS33A-205ENST00000541169 NEURL1BA8MQ27 555 aa23.81■■□□□ 1.4
VPS33A-205ENST00000541169 ALDH1L1O75891 902 aa23.81■■□□□ 1.4
VPS33A-205ENST00000541169 PCCAP05165 728 aaPredicted RBP23.81■■□□□ 1.4
VPS33A-205ENST00000541169 ERFEQ4G0M1 354 aa23.81■■□□□ 1.4
VPS33A-205ENST00000541169 NLRP3Q96P20 1036 aa23.81■■□□□ 1.4
VPS33A-205ENST00000541169 PIM2Q9P1W9 311 aa23.81■■□□□ 1.4
VPS33A-205ENST00000541169 ANKRD31Q8N7Z5 1873 aa23.8■■□□□ 1.4
VPS33A-205ENST00000541169 NLGN2Q8NFZ4 835 aa23.8■■□□□ 1.4
VPS33A-205ENST00000541169 YTHDC1Q96MU7 727 aaKnown RBP23.8■■□□□ 1.4
VPS33A-205ENST00000541169 DLEC1Q9Y238 1755 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 IGKV5-2P06315 115 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 BEND3Q5T5X7 828 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 STYK1Q6J9G0 422 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 NUTM1Q86Y26 1132 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 C2CD5Q86YS7 1000 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 SRCIN1Q9C0H9 1055 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 NOB1Q9ULX3 412 aaKnown RBP23.79■■□□□ 1.4
VPS33A-205ENST00000541169 KIAA1551Q9HCM1 1747 aa23.79■■□□□ 1.4
VPS33A-205ENST00000541169 A0A0G2JLW4 131 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 SRGNP10124 158 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 DPEP1P16444 411 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 GCKRQ14397 625 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 CRY2Q49AN0 593 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 MASTLQ96GX5 879 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 CDHR2Q9BYE9 1310 aa23.78■■□□□ 1.4
VPS33A-205ENST00000541169 F6X3S4 739 aa23.77■■□□□ 1.4
VPS33A-205ENST00000541169 NPR1P16066 1061 aa23.77■■□□□ 1.4
VPS33A-205ENST00000541169 SLC4A10Q6U841 1118 aa23.77■■□□□ 1.4
VPS33A-205ENST00000541169 CNKSR1Q969H4 720 aa23.77■■□□□ 1.4
VPS33A-205ENST00000541169 N4BP2Q86UW6 1770 aaPredicted RBP23.77■■□□□ 1.4
VPS33A-205ENST00000541169 ALDH1B1P30837 517 aa23.76■■□□□ 1.39
VPS33A-205ENST00000541169 CCT4P50991 539 aaKnown RBP23.76■■□□□ 1.39
VPS33A-205ENST00000541169 CWF19L2Q2TBE0 894 aaKnown RBP23.76■■□□□ 1.39
VPS33A-205ENST00000541169 FAM89AQ96GI7 184 aa23.76■■□□□ 1.39
VPS33A-205ENST00000541169 ABCC12Q96J65 1359 aa23.76■■□□□ 1.39
VPS33A-205ENST00000541169 H7C1W4 665 aa23.75■■□□□ 1.39
VPS33A-205ENST00000541169 GRIN3BO60391 1043 aa23.75■■□□□ 1.39
VPS33A-205ENST00000541169 KCNA3P22001 575 aa23.75■■□□□ 1.39
VPS33A-205ENST00000541169 ZKSCAN2Q63HK3 967 aa23.75■■□□□ 1.39
VPS33A-205ENST00000541169 ATF7IPQ6VMQ6 1270 aa23.75■■□□□ 1.39
VPS33A-205ENST00000541169 LAMB2P55268 1798 aa23.75■■□□□ 1.39
VPS33A-205ENST00000541169 BRCA1P38398 1863 aaKnown RBP23.75■■□□□ 1.39
VPS33A-205ENST00000541169 IRS4O14654 1257 aaPredicted RBP23.74■■□□□ 1.39
VPS33A-205ENST00000541169 BCAR3O75815 825 aa23.74■■□□□ 1.39
VPS33A-205ENST00000541169 MS4A1P11836 297 aa23.74■■□□□ 1.39
VPS33A-205ENST00000541169 HOXA10P31260 410 aaPredicted RBP23.74■■□□□ 1.39
VPS33A-205ENST00000541169 DALRD3Q5D0E6 543 aaKnown RBP23.74■■□□□ 1.39
VPS33A-205ENST00000541169 TTLL6Q8N841 843 aa23.74■■□□□ 1.39
VPS33A-205ENST00000541169 RPGRQ92834 1020 aaKnown RBP23.74■■□□□ 1.39
VPS33A-205ENST00000541169 RCAN3Q9UKA8 241 aa23.74■■□□□ 1.39
VPS33A-205ENST00000541169 HDAC5Q9UQL6 1122 aa23.74■■□□□ 1.39
VPS33A-205ENST00000541169 CHRNA5P30532 468 aa23.73■■□□□ 1.39
VPS33A-205ENST00000541169 GPR162Q16538 588 aa23.73■■□□□ 1.39
VPS33A-205ENST00000541169 CCDC24Q8N4L8 307 aa23.73■■□□□ 1.39
VPS33A-205ENST00000541169 PDE8AO60658 829 aa23.72■■□□□ 1.39
VPS33A-205ENST00000541169 SF3B3Q15393 1217 aaKnown RBP23.72■■□□□ 1.39
VPS33A-205ENST00000541169 FRAT1Q92837 279 aaPredicted RBP23.72■■□□□ 1.39
VPS33A-205ENST00000541169 ZNF622Q969S3 477 aaKnown RBP eCLIP23.72■■□□□ 1.39
VPS33A-205ENST00000541169 RBM17Q96I25 401 aaKnown RBP23.72■■□□□ 1.39
VPS33A-205ENST00000541169 CRAMP1Q96RY5 1269 aa23.72■■□□□ 1.39
VPS33A-205ENST00000541169 C9orf78Q9NZ63 289 aaPredicted RBP23.72■■□□□ 1.39
VPS33A-205ENST00000541169 GRM8O00222 908 aa23.71■■□□□ 1.39
VPS33A-205ENST00000541169 SOGA3Q5TF21 947 aa23.71■■□□□ 1.39
VPS33A-205ENST00000541169 HCLS1P14317 486 aaPredicted RBP23.7■■□□□ 1.38
VPS33A-205ENST00000541169 UBE3BQ7Z3V4 1068 aa23.7■■□□□ 1.38
VPS33A-205ENST00000541169 PLA2G12BQ9BX93 195 aa23.7■■□□□ 1.38
VPS33A-205ENST00000541169 COL11A2P13942 1736 aaPredicted RBP23.7■■□□□ 1.38
VPS33A-205ENST00000541169 DDX60Q8IY21 1712 aaKnown RBP23.7■■□□□ 1.38
VPS33A-205ENST00000541169 ABCC4O15439 1325 aa23.69■■□□□ 1.38
VPS33A-205ENST00000541169 ARFGEF1Q9Y6D6 1849 aa23.69■■□□□ 1.38
VPS33A-205ENST00000541169 GRIPAP1Q4V328 841 aa23.69■■□□□ 1.38
VPS33A-205ENST00000541169 INTS3Q68E01 1043 aaKnown RBP23.69■■□□□ 1.38
VPS33A-205ENST00000541169 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.69■■□□□ 1.38
VPS33A-205ENST00000541169 TNRC6CQ9HCJ0 1690 aaKnown RBP23.69■■□□□ 1.38
VPS33A-205ENST00000541169 UTYO14607 1347 aa23.68■■□□□ 1.38
VPS33A-205ENST00000541169 TRIM27P14373 513 aa23.68■■□□□ 1.38
VPS33A-205ENST00000541169 CCDC152Q4G0S7 254 aa23.68■■□□□ 1.38
VPS33A-205ENST00000541169 DDX46Q7L014 1031 aaKnown RBP23.68■■□□□ 1.38
VPS33A-205ENST00000541169 TMC4Q7Z404 712 aa23.68■■□□□ 1.38
VPS33A-205ENST00000541169 BCS1LQ9Y276 419 aa23.68■■□□□ 1.38
VPS33A-205ENST00000541169 RTL5Q5HYW3 569 aaPredicted RBP23.67■■□□□ 1.38
VPS33A-205ENST00000541169 SYNE4Q8N205 404 aa23.67■■□□□ 1.38
VPS33A-205ENST00000541169 BBOX1O75936 387 aa23.66■■□□□ 1.38
VPS33A-205ENST00000541169 CASP7P55210 303 aa23.66■■□□□ 1.38
VPS33A-205ENST00000541169 CC2D2BQ6DHV5 1058 aa23.66■■□□□ 1.38
VPS33A-205ENST00000541169 FTSJ3Q8IY81 847 aaKnown RBP23.66■■□□□ 1.38
VPS33A-205ENST00000541169 PELP1Q8IZL8 1130 aaKnown RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms