RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 VMP1Q96GC9 406 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 GPATCH1Q9BRR8 931 aaKnown RBP13.91□□□□□ -0.18
TRIM28-207ENST00000597136 PELOQ9BRX2 385 aaKnown RBP13.91□□□□□ -0.18
TRIM28-207ENST00000597136 CNPPD1Q9BV87 410 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 MFRPQ9BY79 579 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 DEFB126Q9BYW3 111 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 ANKRA2Q9H9E1 313 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.91□□□□□ -0.182e-6■■■■□ 22
TRIM28-207ENST00000597136 STMN3Q9NZ72 180 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 ERVK-19Q9WJR5 959 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 ZNF407Q9C0G0 2248 aa13.91□□□□□ -0.18
TRIM28-207ENST00000597136 ERICH4A6NGS2 130 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 PLOD2O00469 737 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 SLITRK5O94991 958 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 CLPSP04118 112 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 IGKV3-11P04433 115 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 S1PR1P21453 382 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 UQCRC2P22695 453 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 MC3RP41968 323 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 RASSF2P50749 326 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 NCALDP61601 193 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 MRPS35P82673 323 aaKnown RBP13.9□□□□□ -0.18
TRIM28-207ENST00000597136 MAP4K2Q12851 820 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 NFATC3Q12968 1075 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 CRB2Q5IJ48 1285 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 ACER2Q5QJU3 275 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 IGFL2Q6UWQ7 119 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 CLEC4FQ8N1N0 589 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 RBMXL3Q8N7X1 1067 aaKnown RBP13.9□□□□□ -0.18
TRIM28-207ENST00000597136 CATSPER1Q8NEC5 780 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 OR7G2Q8NG99 324 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 CTHRC1Q96CG8 243 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 AURKBQ96GD4 344 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-207ENST00000597136 ANKRD27Q96NW4 1050 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 HOPXQ9BPY8 73 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-207ENST00000597136 BTBD10Q9BSF8 475 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 NDE1Q9NXR1 346 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 MAT2BQ9NZL9 334 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 NTMQ9P121 344 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.9□□□□□ -0.18
TRIM28-207ENST00000597136 ZNF451Q9Y4E5 1061 aa13.9□□□□□ -0.18
TRIM28-207ENST00000597136 PLOD3O60568 738 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 NME6O75414 186 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-207ENST00000597136 C1QL1O75973 258 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 SFTPCP11686 197 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 SOAT1P35610 550 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 CCT3P49368 545 aaKnown RBP13.89□□□□□ -0.19
TRIM28-207ENST00000597136 PSME3P61289 254 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 MFAP5Q13361 173 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 NADK2Q4G0N4 442 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 TRMT12Q53H54 448 aaKnown RBP13.89□□□□□ -0.19
TRIM28-207ENST00000597136 RUNDC3AQ59EK9 446 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 FHL5Q5TD97 284 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 NANOGP8Q6NSW7 305 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 C16orf89Q6UX73 402 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 TMEM64Q6YI46 380 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 RPS19BP1Q86WX3 136 aaKnown RBP13.89□□□□□ -0.19
TRIM28-207ENST00000597136 GALNT12Q8IXK2 581 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 DEFB107AQ8IZN7 70 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 PGAM4Q8N0Y7 254 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 BEST3Q8N1M1 668 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 OR5AK3PQ8NH89 298 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 SFXN5Q8TD22 340 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 FAM120BQ96EK7 910 aaKnown RBP13.89□□□□□ -0.19
TRIM28-207ENST00000597136 FBXL20Q96IG2 436 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 LMF1Q96S06 567 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 SLC35A5Q9BS91 424 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 NANOGQ9H9S0 305 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 ZNF639Q9UID6 485 aa13.89□□□□□ -0.19
TRIM28-207ENST00000597136 A0A087WV62 115 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 RNF103-CHMP3A0A140T963 221 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 UPK1AO00322 258 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 GYG2O15488 501 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 EMC8O43402 210 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 ZNF354AO60765 605 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-207ENST00000597136 WDPCPO95876 746 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 C1QCP02747 245 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 ALPPP05187 535 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 IFI6P09912 130 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 SLC6A2P23975 617 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 SLC37A1P57057 533 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 RNF4P78317 190 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 DUSP8Q13202 625 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 EXOSC7Q15024 291 aaKnown RBP13.88□□□□□ -0.19
TRIM28-207ENST00000597136 SPDYE7PQ495Y7 208 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 ZNF468Q5VIY5 522 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-207ENST00000597136 IGFL3Q6UXB1 125 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 HSDL2Q6YN16 418 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 C9orf40Q8IXQ3 194 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 OR2L13Q8N349 312 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 VWA5B2Q8N398 1253 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 ZFP90Q8TF47 636 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 MAGED4Q96JG8 741 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 ZNF354BQ96LW1 612 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 CPPED1Q9BRF8 314 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-207ENST00000597136 TRIM8Q9BZR9 551 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 LRMDAQ9H2I8 198 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 EPS8L2Q9H6S3 715 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 TPT1P8Q9HAU6 139 aa13.88□□□□□ -0.19
TRIM28-207ENST00000597136 C3orf14Q9HBI5 128 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms