RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 DLK1P80370 383 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 MRPS21P82921 87 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 MRPS34P82930 218 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 CCZ1BP86790 482 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 CCZ1P86791 482 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 SORDQ00796 357 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 PAX5Q02548 391 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SLC34A1Q06495 639 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 ITGADQ13349 1161 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 NAB1Q13506 487 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 CAPRIN1Q14444 709 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 FASTKD3Q14CZ7 662 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 DAZAP2Q15038 168 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 PDK2Q15119 407 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 C2orf68Q2NKX9 166 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 KIF19Q2TAC6 998 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 KLHL22Q53GT1 634 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 ARL13AQ5H913 290 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 AGAP6Q5VW22 663 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 IL23RQ5VWK5 629 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 ZNF770Q6IQ21 691 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 FAM166AQ6J272 317 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 TMEM71Q6P5X7 295 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 LRRC8BQ6P9F7 803 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 RHBDF2Q6PJF5 856 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 TMEM107Q6UX40 140 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 CYB5R4Q7L1T6 521 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SLC26A9Q7LBE3 791 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SNX20Q7Z614 316 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SCD5Q86SK9 330 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SERPINA9Q86WD7 417 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 PLD3Q8IV08 490 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 CCDC50Q8IVM0 306 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 FGFRL1Q8N441 504 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 LIX1Q8N485 282 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 C17orf78Q8N4C9 275 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SIDT2Q8NBJ9 832 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 TMEM104Q8NE00 496 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 FBXL13Q8NEE6 735 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 OR2L3Q8NG85 312 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 OR5D18Q8NGL1 313 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 OR2AJ1Q8NGZ0 328 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 M1APQ8TC57 530 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 RAET1EQ8TD07 263 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 GTF2H4Q92759 462 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 MRPL53Q96EL3 112 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 ZNF274Q96GC6 653 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 AKR1E2Q96JD6 320 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 MARK4Q96L34 752 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 B3GALT6Q96L58 329 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 VPS35Q96QK1 796 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 TGS1Q96RS0 853 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 CYP2S1Q96SQ9 504 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 CTRCQ99895 268 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 C16orf70Q9BSU1 422 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 CCDC28BQ9BUN5 200 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 POLR3FQ9H1D9 316 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 NARFLQ9H6Q4 476 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 MYOZ2Q9NPC6 264 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 ZDHHC4Q9NPG8 344 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 ADARB2Q9NS39 739 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 C20orf96Q9NUD7 363 aaPredicted RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 RHBDL2Q9NX52 303 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 KLHL13Q9P2N7 655 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 P2RX2Q9UBL9 471 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 POLKQ9UBT6 870 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 APOBEC3BQ9UH17 382 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 MRM2Q9UI43 246 aaKnown RBP3.79□□□□□ -1.8
VPS41-212ENST00000482217 PHF11Q9UIL8 331 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 ICKQ9UPZ9 632 aa3.79□□□□□ -1.8
VPS41-212ENST00000482217 SNED1Q8TER0 1413 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 CPDO75976 1380 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 MROH7-TTC4A0A0A0MT08 1334 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 A0A0G2JLW4 131 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 A0A1W2PPC1 479 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 A0A1W2PQ67 120 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 A0A1W2PQ72 361 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 GSTTP1A0A1W2PQM5 241 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 FUOMA2VDF0 154 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 CXorf65A6NEN9 183 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 ARGFXA6NJG6 315 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 HSPB2A8KAH6 182 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 CENPBD1B2RD01 187 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 MS4A18H0YCH9 400 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 EEF2KO00418 725 aaKnown RBP3.78□□□□□ -1.8
VPS41-212ENST00000482217 XRCC3O43542 346 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 GATCO43716 136 aaKnown RBP3.78□□□□□ -1.8
VPS41-212ENST00000482217 RPS6KA5O75582 802 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 DDNO94850 711 aaPredicted RBP3.78□□□□□ -1.8
VPS41-212ENST00000482217 SYNGR4O95473 234 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 TSPAN12O95859 305 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 GH2P01242 217 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 IDO1P14902 403 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 ZNF7P17097 686 aaPredicted RBP3.78□□□□□ -1.8
VPS41-212ENST00000482217 GIFP27352 417 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 LAP3P28838 519 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 MPGP29372 298 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 GNA11P29992 359 aa3.78□□□□□ -1.8
VPS41-212ENST00000482217 HNRNPH1P31943 449 aaKnown RBP3.78□□□□□ -1.8
VPS41-212ENST00000482217 CASP14P31944 242 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms