RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 COPS6Q7L5N1 327 aa15.17■□□□□ 0.02
HDAC6-230ENST00000488543 DCTPP1Q9H773 170 aa15.17■□□□□ 0.02
HDAC6-230ENST00000488543 HYPKQ9NX55 129 aa15.17■□□□□ 0.02
HDAC6-230ENST00000488543 XAGE3Q8WTP9 111 aa15.16■□□□□ 0.02
HDAC6-230ENST00000488543 LNPKQ9C0E8 428 aa15.16■□□□□ 0.02
HDAC6-230ENST00000488543 DNAAF4Q8WXU2 420 aa15.16■□□□□ 0.02
HDAC6-230ENST00000488543 THSD7AQ9UPZ6 1657 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 KCNQ4P56696 695 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 BEND3Q5T5X7 828 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 USP44Q9H0E7 712 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 MAP3K2Q9Y2U5 619 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 GNAI2P04899 355 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 GNAI3P08754 354 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 ANKRD45Q5TZF3 282 aa15.15■□□□□ 0.02
HDAC6-230ENST00000488543 SRCIN1Q9C0H9 1055 aa15.14■□□□□ 0.01
HDAC6-230ENST00000488543 FRAT2O75474 233 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-230ENST00000488543 ZNF330Q9Y3S2 320 aaPredicted RBP15.14■□□□□ 0.01
HDAC6-230ENST00000488543 KSR2Q6VAB6 950 aa15.13■□□□□ 0.01
HDAC6-230ENST00000488543 RGS17Q9UGC6 210 aaPredicted RBP15.13■□□□□ 0.01
HDAC6-230ENST00000488543 ZNF772Q68DY9 489 aaPredicted RBP15.12■□□□□ 0.01
HDAC6-230ENST00000488543 VSIG10Q8N0Z9 540 aa15.12■□□□□ 0.01
HDAC6-230ENST00000488543 TTLL7Q6ZT98 887 aa15.12■□□□□ 0.01
HDAC6-230ENST00000488543 LOC102724428A0A0B4J2F2 783 aa15.11■□□□□ 0.01
HDAC6-230ENST00000488543 CYP19A1P11511 503 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-230ENST00000488543 ATP6V1AP38606 617 aa15.11■□□□□ 0.01
HDAC6-230ENST00000488543 SIK1P57059 783 aa15.11■□□□□ 0.01
HDAC6-230ENST00000488543 CWF19L2Q2TBE0 894 aaKnown RBP15.11■□□□□ 0.01
HDAC6-230ENST00000488543 RIC3Q7Z5B4 369 aa15.11■□□□□ 0.01
HDAC6-230ENST00000488543 LRRFIP2Q9Y608 721 aaKnown RBP15.11■□□□□ 0.01
HDAC6-230ENST00000488543 ANKRD13DQ6ZTN6 518 aa15.11■□□□□ 0.01
HDAC6-230ENST00000488543 PALLDQ8WX93 1383 aa15.1■□□□□ 0.01
HDAC6-230ENST00000488543 STARD3NLO95772 234 aa15.1■□□□□ 0.01
HDAC6-230ENST00000488543 RBM6P78332 1123 aaKnown RBP15.1■□□□□ 0.01
HDAC6-230ENST00000488543 ITPK1Q13572 414 aa15.1■□□□□ 0.01
HDAC6-230ENST00000488543 UBTFL1P0CB47 393 aaPredicted RBP15.1■□□□□ 0.01
HDAC6-230ENST00000488543 ATP8B2P98198 1209 aa15.1■□□□□ 0.01
HDAC6-230ENST00000488543 BRPF3Q9ULD4 1205 aa15.1■□□□□ 0.01
HDAC6-230ENST00000488543 ARFGEF2Q9Y6D5 1785 aa15.1■□□□□ 0.01
HDAC6-230ENST00000488543 HMMRO75330 724 aa15.09■□□□□ 0.01
HDAC6-230ENST00000488543 KRT27Q7Z3Y8 459 aa15.09■□□□□ 0.01
HDAC6-230ENST00000488543 TEX13AQ9BXU3 409 aaPredicted RBP15.09■□□□□ 0.01
HDAC6-230ENST00000488543 ZBTB1Q9Y2K1 713 aa15.09■□□□□ 0.01
HDAC6-230ENST00000488543 PNMA6EA0A0J9YXQ4 647 aa15.09■□□□□ 0.01
HDAC6-230ENST00000488543 ALDH1L1O75891 902 aa15.09■□□□□ 0.01
HDAC6-230ENST00000488543 DDX58O95786 925 aaKnown RBP15.09■□□□□ 0.01
HDAC6-230ENST00000488543 NBPF7P0C2Y1 421 aaPredicted RBP15.08■□□□□ 0.01
HDAC6-230ENST00000488543 POTEAQ6S8J7 498 aa15.08■□□□□ 0.01
HDAC6-230ENST00000488543 ZBTB3Q9H5J0 574 aa15.08■□□□□ 0.01
HDAC6-230ENST00000488543 IGKV5-2P06315 115 aa15.08■□□□□ 0
HDAC6-230ENST00000488543 SLKQ9H2G2 1235 aaPredicted RBP15.08■□□□□ 0
HDAC6-230ENST00000488543 ATP5J2-PTCD1G3V325 749 aa15.07■□□□□ 0
HDAC6-230ENST00000488543 MYD88Q99836 296 aa15.07■□□□□ 0
HDAC6-230ENST00000488543 NUP188Q5SRE5 1749 aa15.07■□□□□ 0
HDAC6-230ENST00000488543 ERBB4Q15303 1308 aa15.07■□□□□ 0
HDAC6-230ENST00000488543 RXRBP28702 533 aa15.07■□□□□ 0
HDAC6-230ENST00000488543 SMARCA5O60264 1052 aaPredicted RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 GSE1Q14687 1217 aa15.06■□□□□ 0
HDAC6-230ENST00000488543 LINS1Q8NG48 757 aa15.06■□□□□ 0
HDAC6-230ENST00000488543 JARID2Q92833 1246 aaPredicted RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 SMARCC1Q92922 1105 aaPredicted RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 AFDNP55196 1824 aaKnown RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 IBTKQ9P2D0 1353 aaPredicted RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 INTS5Q6P9B9 1019 aaKnown RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 PLEKHM2Q8IWE5 1019 aa15.06■□□□□ 0
HDAC6-230ENST00000488543 C16orf71Q8IYS4 520 aaPredicted RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 METTL22Q9BUU2 404 aaPredicted RBP15.06■□□□□ 0
HDAC6-230ENST00000488543 TRIM37O94972 964 aa15.05■□□□□ 0
HDAC6-230ENST00000488543 CRKLP46109 303 aaKnown RBP15.05■□□□□ 0
HDAC6-230ENST00000488543 POLA2Q14181 598 aa15.05■□□□□ 0
HDAC6-230ENST00000488543 SMIM5Q71RC9 77 aa15.05■□□□□ 0
HDAC6-230ENST00000488543 PLBD2Q8NHP8 589 aa15.05■□□□□ 0
HDAC6-230ENST00000488543 SSH3Q8TE77 659 aa15.05■□□□□ 0
HDAC6-230ENST00000488543 BRWD3Q6RI45 1802 aa15.05■□□□□ -0
HDAC6-230ENST00000488543 UTYO14607 1347 aa15.05■□□□□ -0
HDAC6-230ENST00000488543 BMP2KLQ5H9B9 411 aa15.05■□□□□ -0
HDAC6-230ENST00000488543 SPRYD3Q8NCJ5 442 aa15.05■□□□□ -0
HDAC6-230ENST00000488543 OTUD7AQ8TE49 926 aaPredicted RBP15.05■□□□□ -0
HDAC6-230ENST00000488543 EXOC6BQ9Y2D4 811 aa15.04■□□□□ -0
HDAC6-230ENST00000488543 APBB1O00213 710 aa15.04■□□□□ -0
HDAC6-230ENST00000488543 FAM196AQ6ZSG2 479 aa15.04■□□□□ -0
HDAC6-230ENST00000488543 PPP1R42Q7Z4L9 355 aa15.04■□□□□ -0
HDAC6-230ENST00000488543 LINC00116Q8NCU8 138 aa15.04■□□□□ -0
HDAC6-230ENST00000488543 TBC1D2BQ9UPU7 963 aa15.04■□□□□ -0
HDAC6-230ENST00000488543 NEURL1BA8MQ27 555 aa15.03■□□□□ -0
HDAC6-230ENST00000488543 C9orf78Q9NZ63 289 aaPredicted RBP15.03■□□□□ -0
HDAC6-230ENST00000488543 NEXNQ0ZGT2 675 aa15.03■□□□□ -0
HDAC6-230ENST00000488543 BCL11BQ9C0K0 894 aaPredicted RBP15.03■□□□□ -0
HDAC6-230ENST00000488543 CCDC87Q9NVE4 849 aa15.03■□□□□ -0
HDAC6-230ENST00000488543 TUBGCP6Q96RT7 1819 aa15.03■□□□□ -0
HDAC6-230ENST00000488543 TJP1Q07157 1748 aa15.03■□□□□ -0
HDAC6-230ENST00000488543 HLFQ16534 295 aa15.02■□□□□ -0
HDAC6-230ENST00000488543 BTAF1O14981 1849 aa15.02□□□□□ -0.01
HDAC6-230ENST00000488543 GRM8O00222 908 aa15.02□□□□□ -0.01
HDAC6-230ENST00000488543 GSPT1P15170 499 aaKnown RBP15.02□□□□□ -0.01
HDAC6-230ENST00000488543 MTX1Q13505 466 aa15.02□□□□□ -0.01
HDAC6-230ENST00000488543 GCKRQ14397 625 aa15.02□□□□□ -0.01
HDAC6-230ENST00000488543 KAZALD1Q96I82 304 aa15.01□□□□□ -0.01
HDAC6-230ENST00000488543 CCNL1Q9UK58 526 aaPredicted RBP15.01□□□□□ -0.01
HDAC6-230ENST00000488543 SBF2Q86WG5 1849 aa15.01□□□□□ -0.01
HDAC6-230ENST00000488543 MYH14Q7Z406 1995 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms