RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 AMER3Q8N944 861 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 SRFBP1Q8NEF9 429 aaKnown RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 OR2L5Q8NG80 312 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 HUS1BQ8NHY5 278 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 MIEF2Q96C03 454 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 MS4A6EQ96DS6 147 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 SMIM10Q96HG1 83 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 F2RL3Q96RI0 385 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 ZNF382Q96SR6 550 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 MTERF1Q99551 399 aaKnown RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 LHPPQ9H008 270 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 GSTO2Q9H4Y5 243 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 MKKSQ9NPJ1 570 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-205ENST00000465238 AGPAT4Q9NRZ5 378 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 TRPS1Q9UHF7 1281 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 ITPR2Q14571 2701 aa16.71■□□□□ 0.27
COL7A1-205ENST00000465238 A0A088AWK7 358 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ANKUB1A6NFN9 424 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 WIPF3A6NGB9 483 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 FFAR3O14843 346 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 GPR42O15529 346 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ALOX12BO75342 701 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 RDH16O75452 317 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 OR4F21O95013 312 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ZNF10P21506 573 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 PTX3P26022 381 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ALDH3A1P30838 453 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 PKNOX1P55347 436 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 BTN3A2P78410 334 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 MAT1AQ00266 395 aaKnown RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 SYT16Q17RD7 645 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ADPRMQ3LIE5 342 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 TMEM35AQ53FP2 167 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 C10orf62Q5T681 223 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 FRG2Q64ET8 278 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 HIST2H2BCQ6DN03 193 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 PDSS2Q86YH6 399 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 OR11G2Q8NGC1 345 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 STT3BQ8TCJ2 826 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 MTFMTQ96DP5 389 aaKnown RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 FRG2BQ96QU4 278 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 CENPKQ9BS16 269 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 CRB3Q9BUF7 120 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 MS4A8Q9BY19 250 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ELOVL6Q9H5J4 265 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 CLK4Q9HAZ1 481 aaKnown RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 MID1IP1Q9NPA3 183 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 HCN3Q9P1Z3 774 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 ERRFI1Q9UJM3 462 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-205ENST00000465238 SNX6Q9UNH7 406 aa16.7■□□□□ 0.26
COL7A1-205ENST00000465238 IGLV3-12A0A075B6K2 115 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 A0A1B0GTL3 188 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 ZNF860A6NHJ4 632 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 FOXE1O00358 373 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-205ENST00000465238 TM9SF1O15321 606 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 SH3BGRLO75368 114 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 TBX6O95947 436 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-205ENST00000465238 B3GALT4O96024 378 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 ZGLP1P0C6A0 271 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 HMOX2P30519 316 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 NEK2P51955 445 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 PLA2G16P53816 162 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 RPS13P62277 151 aaKnown RBP16.69■□□□□ 0.26
COL7A1-205ENST00000465238 SGO1Q5FBB7 561 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 VWA2Q5GFL6 755 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 DEPDC1Q5TB30 811 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 KHDRBS2Q5VWX1 349 aaKnown RBP16.69■□□□□ 0.26
COL7A1-205ENST00000465238 LETMD1Q6P1Q0 360 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 FRMD7Q6ZUT3 714 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 PARP9Q8IXQ6 854 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 PRSS58Q8IYP2 241 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 CDYL2Q8N8U2 506 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 OR51Q1Q8NH59 317 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 WDR20Q8TBZ3 569 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 GATA5Q9BWX5 397 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-205ENST00000465238 ROGDIQ9GZN7 287 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 AICDAQ9GZX7 198 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 OR51B5Q9H339 312 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 EPS8L2Q9H6S3 715 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 VIPAS39Q9H9C1 493 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 COPS7BQ9H9Q2 264 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-205ENST00000465238 DMRT3Q9NQL9 472 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 C14orf105Q9NVL8 296 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 PSD3Q9NYI0 1048 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 SLC5A6Q9Y289 635 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 NTNG1Q9Y2I2 539 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 SCN2AQ99250 2005 aa16.69■□□□□ 0.26
COL7A1-205ENST00000465238 CRYBG3Q68DQ2 2970 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 A0A0G2JN53 185 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 A1L4Q6 167 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 MAGEB17A8MXT2 336 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 H3BQF6 201 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 CHST10O43529 356 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 ZWINTO95229 277 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 ESRRBO95718 433 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 LDLRP01130 860 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 KRT6AP02538 564 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 KRT6BP04259 564 aa16.68■□□□□ 0.26
COL7A1-205ENST00000465238 ENO1P06733 434 aaKnown RBP16.68■□□□□ 0.26
COL7A1-205ENST00000465238 BPGMP07738 259 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms