RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PTPN6P29350 595 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MLLT3P42568 568 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 IL12RB1P42701 662 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 KIR2DL3P43628 341 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 EIF4EBP2Q13542 120 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MBOAT1Q6ZNC8 495 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 ATCAYQ86WG3 371 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 NKAPQ8N5F7 415 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MDGA1Q8NFP4 955 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 DNAJB3Q8WWF6 145 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 SAMD4AQ9UPU9 718 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MYCP01106 439 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MLLT6P55198 1093 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM205BPQ63HN1 556 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 OR4F3Q6IEY1 312 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MSANTD2Q6P1R3 559 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 FAHD1Q6P587 224 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 LRRTM3Q86VH5 581 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 ZSWIM9Q86XI8 627 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 RMDN1Q96DB5 314 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 PPP3R2Q96LZ3 170 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 PPP1R2P1Q96PQ5 205 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 APOL5Q9BWW9 433 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 MRPL9Q9BYD2 267 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 PPT2Q9UMR5 302 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 HSPB11Q9Y547 144 aa13.03□□□□□ -0.32
CCDC88C-201ENST00000331194 CCL15-CCL14A0A0B4J2E2 113 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 A8MUA0 341 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 LEUTXA8MZ59 168 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 VPS26AO75436 327 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 CCNDBP1O95273 360 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 PKMP14618 531 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 KCNE1P15382 129 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 PRKACAP17612 351 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 OGNP20774 298 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 PTGS2P35354 604 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 TIE1P35590 1138 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 GNPDA1P46926 289 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 CCL15Q16663 113 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 FAM124AQ86V42 546 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 SLC5A8Q8N695 610 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 LPPQ93052 612 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 MAL2Q969L2 176 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 IGSF8Q969P0 613 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 MYEOVQ96EZ4 313 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 COL21A1Q96P44 957 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 NIPSNAP1Q9BPW8 284 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 SRRQ9GZT4 340 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 LRTM1Q9HBL6 345 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 FKBPLQ9UIM3 349 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 PPP2R3BQ9Y5P8 575 aa13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 CFAP20Q9Y6A4 193 aaKnown RBP13.02□□□□□ -0.32
CCDC88C-201ENST00000331194 NOS1APO75052 506 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 TBX18O95935 607 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 HMBSP08397 361 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 PSKH1P11801 424 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 DARSP14868 501 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 S100A3P33764 101 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 KDELR2P33947 212 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 FCHO2Q0JRZ9 810 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 VEPH1Q14D04 833 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 CPSF6Q16630 551 aaKnown RBP eCLIP13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 ZRANB3Q5FWF4 1079 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 FAM131AQ6UXB0 335 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 SCD5Q86SK9 330 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF605Q86T29 641 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 RNF175Q8N4F7 328 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 GALNT6Q8NCL4 622 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 TOR1AIP2Q8NFQ8 470 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 RTP3Q9BQQ7 232 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 DYRK4Q9NR20 520 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 SLC23A1Q9UHI7 598 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 CFL2Q9Y281 166 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 CLCA3PQ9Y6N3 262 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 NINQ8N4C6 2090 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 LOC730098B7Z3J9 87 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 TAPBPO15533 448 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 ULK1O75385 1050 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 GGT2P36268 569 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 RAB25P57735 213 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 USP39Q53GS9 565 aaKnown RBP13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 OVOS1Q6IE37 1185 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 TMEM132CQ8N3T6 1108 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 ZFAND1Q8TCF1 268 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 CLEC2DQ9UHP7 191 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 ZSWIM8A7E2V4 1837 aa13.02□□□□□ -0.33
CCDC88C-201ENST00000331194 RFXANKO14593 260 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 RGS14O43566 566 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 ESR1P03372 595 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 OPN1SWP03999 348 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 CLEC2LP0C7M8 214 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 ENGP17813 658 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 PKLRP30613 574 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 OR1E2P47887 323 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 TOR2AQ5JU69 321 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 LAMTOR1Q6IAA8 161 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 TAPT1Q6NXT6 567 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 EFHBQ8N7U6 833 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 FRMD6Q96NE9 622 aa13.01□□□□□ -0.33
CCDC88C-201ENST00000331194 GFM1Q96RP9 751 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms