Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Lima1Q9ERG0 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
Lima1Q9ERG0 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Lima1Q9ERG0 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Lima1Q9ERG0 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Gm44729-201ENSMUST00000206759 2052 ntBASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Gm15565-201ENSMUST00000118890 427 ntBASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Lima1Q9ERG0 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Spsb2-203ENSMUST00000112473 1322 ntBASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 AC159205.6-201ENSMUST00000224935 887 ntBASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Lima1Q9ERG0 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Gm27528-202ENSMUST00000222916 2012 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Gm13186-201ENSMUST00000118031 316 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Mir6982-201ENSMUST00000184354 68 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Gm29994-201ENSMUST00000195495 1193 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 AC159205.3-201ENSMUST00000224614 874 ntBASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Lima1Q9ERG0 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.73■□□□□ 0.11
Lima1Q9ERG0 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms