Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Gm18049-201ENSMUST00000208909 581 ntBASIC17.99■□□□□ 0.47
Upf1Q9EPU0 AC154171.1-201ENSMUST00000224610 643 ntBASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf1Q9EPU0 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Gm27533-201ENSMUST00000183800 152 ntBASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
Upf1Q9EPU0 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Upf1Q9EPU0 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm13015-201ENSMUST00000118674 204 ntBASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm15806-201ENSMUST00000120696 955 ntBASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm11918-201ENSMUST00000121660 179 ntBASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Upf1Q9EPU0 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.96■□□□□ 0.46
Upf1Q9EPU0 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Gm9200-201ENSMUST00000118513 1354 ntBASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Mir1982-201ENSMUST00000157368 74 ntBASIC17.95■□□□□ 0.46
Upf1Q9EPU0 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Gm8116-201ENSMUST00000182917 1201 ntBASIC17.95■□□□□ 0.46
Upf1Q9EPU0 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Asic1-205ENSMUST00000228185 1818 ntBASIC17.95■□□□□ 0.46
Upf1Q9EPU0 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Upf1Q9EPU0 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.94■□□□□ 0.46
Upf1Q9EPU0 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf1Q9EPU0 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf1Q9EPU0 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Upf1Q9EPU0 Gm12957-201ENSMUST00000117835 377 ntBASIC17.94■□□□□ 0.46
Upf1Q9EPU0 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Upf1Q9EPU0 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC17.94■□□□□ 0.46
Upf1Q9EPU0 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.94■□□□□ 0.46
Upf1Q9EPU0 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.94■□□□□ 0.46
Upf1Q9EPU0 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms