Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Mir3081-201ENSMUST00000175305 84 ntBASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Trub1Q8C0D0 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.43■□□□□ 0.22
Trub1Q8C0D0 App-207ENSMUST00000227737 2827 ntBASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Gm7284-201ENSMUST00000131667 944 ntBASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Gm8349-201ENSMUST00000182720 1003 ntBASIC16.43■□□□□ 0.22
Trub1Q8C0D0 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.43■□□□□ 0.22
Trub1Q8C0D0 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Trub1Q8C0D0 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.42■□□□□ 0.22
Trub1Q8C0D0 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Rprl3-201ENSMUST00000157400 290 ntBASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Gm6257-201ENSMUST00000163864 910 ntBASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trub1Q8C0D0 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trub1Q8C0D0 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms