Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Ddx55Q6ZPL9 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Gm20553-201ENSMUST00000204205 844 ntBASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ddx55Q6ZPL9 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Mir6990-201ENSMUST00000183724 91 ntBASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Thap2-203ENSMUST00000218989 527 ntBASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ddx55Q6ZPL9 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Gm20949-201ENSMUST00000206478 952 ntBASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ddx55Q6ZPL9 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Gm43474-201ENSMUST00000196415 774 ntBASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Ddx55Q6ZPL9 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ddx55Q6ZPL9 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ddx55Q6ZPL9 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms