Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
ShhQ62226 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ShhQ62226 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ShhQ62226 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ShhQ62226 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.03
ShhQ62226 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ShhQ62226 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
ShhQ62226 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC14.83□□□□□ -0.04
ShhQ62226 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
ShhQ62226 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC14.83□□□□□ -0.04
ShhQ62226 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.83□□□□□ -0.04
ShhQ62226 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.83□□□□□ -0.04
ShhQ62226 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.83□□□□□ -0.04
ShhQ62226 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.83□□□□□ -0.04
ShhQ62226 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
ShhQ62226 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
ShhQ62226 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Gm10576-201ENSMUST00000191927 825 ntBASIC14.83□□□□□ -0.04
ShhQ62226 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.83□□□□□ -0.04
ShhQ62226 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.83□□□□□ -0.04
ShhQ62226 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.83□□□□□ -0.04
ShhQ62226 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.83□□□□□ -0.04
ShhQ62226 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.83□□□□□ -0.04
ShhQ62226 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
ShhQ62226 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.83□□□□□ -0.04
ShhQ62226 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.83□□□□□ -0.04
ShhQ62226 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
ShhQ62226 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
ShhQ62226 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
ShhQ62226 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gm11779-201ENSMUST00000118541 368 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gm15467-201ENSMUST00000120582 445 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Gm12350-201ENSMUST00000121208 462 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gm10060-201ENSMUST00000212002 111 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.82□□□□□ -0.04
ShhQ62226 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.82□□□□□ -0.04
ShhQ62226 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC14.82□□□□□ -0.04
ShhQ62226 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC14.82□□□□□ -0.04
ShhQ62226 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
ShhQ62226 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ShhQ62226 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ShhQ62226 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
ShhQ62226 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ShhQ62226 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.81□□□□□ -0.04
ShhQ62226 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms