Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm15039-201ENSMUST00000118914 875 ntBASIC15.2■□□□□ 0.02
Nr1h4Q60641 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Gm16061-201ENSMUST00000122167 857 ntBASIC15.2■□□□□ 0.02
Nr1h4Q60641 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1h4Q60641 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.19■□□□□ 0.02
Nr1h4Q60641 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Gm11336-201ENSMUST00000118168 334 ntBASIC15.19■□□□□ 0.02
Nr1h4Q60641 Gm12669-201ENSMUST00000122162 1009 ntBASIC15.19■□□□□ 0.02
Nr1h4Q60641 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1h4Q60641 Spsb2-203ENSMUST00000112473 1322 ntBASIC15.18■□□□□ 0.02
Nr1h4Q60641 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nr1h4Q60641 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Gm2274-201ENSMUST00000184539 609 ntBASIC15.17■□□□□ 0.02
Nr1h4Q60641 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Nr1h4Q60641 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms