Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col27a1Q5QNQ9 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Gm15487-201ENSMUST00000122373 465 ntBASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col27a1Q5QNQ9 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm8410-201ENSMUST00000117225 605 ntBASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Gm18737-201ENSMUST00000173594 937 ntBASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col27a1Q5QNQ9 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
Col27a1Q5QNQ9 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Syt7-205ENSMUST00000224135 1557 ntBASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Gm14767-201ENSMUST00000121559 586 ntBASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Gm9824-201ENSMUST00000178707 561 ntBASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Gm27989-201ENSMUST00000184721 107 ntBASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col27a1Q5QNQ9 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col27a1Q5QNQ9 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms