Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Gm11424-201ENSMUST00000121929 829 ntBASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 AC158538.2-201ENSMUST00000225455 906 ntBASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 AC154767.3-201ENSMUST00000225150 1342 ntBASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ddb1Q3U1J4 Gm29361-201ENSMUST00000183323 2000 ntBASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Gm6257-201ENSMUST00000163864 910 ntBASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Gm27437-201ENSMUST00000183429 107 ntBASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ddb1Q3U1J4 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 Gm9385-201ENSMUST00000117563 472 ntBASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.16■□□□□ 0.82
Ddb1Q3U1J4 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Gm24158-201ENSMUST00000175263 71 ntBASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 AC125206.2-201ENSMUST00000217454 574 ntBASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 AC159621.2-201ENSMUST00000223519 1326 ntBASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ddb1Q3U1J4 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Ddb1Q3U1J4 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.14■□□□□ 0.82
Ddb1Q3U1J4 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ddb1Q3U1J4 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Gm13410-201ENSMUST00000117058 1415 ntBASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Gm6018-201ENSMUST00000216090 1306 ntBASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ddb1Q3U1J4 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Gm5866-201ENSMUST00000177881 973 ntBASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Gm18057-201ENSMUST00000208220 503 ntBASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ddb1Q3U1J4 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms