Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Cux1P53564 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Gm8318-201ENSMUST00000182954 872 ntBASIC24.32■■□□□ 1.48
Cux1P53564 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC24.32■■□□□ 1.48
Cux1P53564 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC24.32■■□□□ 1.48
Cux1P53564 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Cux1P53564 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Cux1P53564 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC24.31■■□□□ 1.48
Cux1P53564 Rprl2-201ENSMUST00000157150 290 ntBASIC24.31■■□□□ 1.48
Cux1P53564 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC24.31■■□□□ 1.48
Cux1P53564 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC24.31■■□□□ 1.48
Cux1P53564 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC24.31■■□□□ 1.48
Cux1P53564 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Cux1P53564 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Cux1P53564 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
Cux1P53564 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC24.3■■□□□ 1.48
Cux1P53564 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC24.3■■□□□ 1.48
Cux1P53564 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
Cux1P53564 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC24.3■■□□□ 1.48
Cux1P53564 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC24.3■■□□□ 1.48
Cux1P53564 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
Cux1P53564 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Cux1P53564 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC24.3■■□□□ 1.48
Cux1P53564 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Cux1P53564 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
Cux1P53564 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
Cux1P53564 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
Cux1P53564 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Gm22065-201ENSMUST00000103753 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm22066-201ENSMUST00000103761 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24932-201ENSMUST00000103763 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24115-201ENSMUST00000103799 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm22190-201ENSMUST00000103827 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm22191-201ENSMUST00000103831 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24721-201ENSMUST00000103849 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm28018-201ENSMUST00000103869 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm26399-201ENSMUST00000103937 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC24.29■■□□□ 1.48
Cux1P53564 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC24.29■■□□□ 1.48
Cux1P53564 Gm25349-201ENSMUST00000177728 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm23616-201ENSMUST00000177797 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm25871-201ENSMUST00000177816 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24752-201ENSMUST00000178240 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24496-201ENSMUST00000178287 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm25649-201ENSMUST00000178476 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm25548-201ENSMUST00000178681 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm23147-201ENSMUST00000178841 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm26095-201ENSMUST00000179270 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm22171-201ENSMUST00000179283 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm23936-201ENSMUST00000179354 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm22619-201ENSMUST00000179516 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm25255-201ENSMUST00000179579 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24755-201ENSMUST00000179691 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm26506-201ENSMUST00000179692 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm25086-201ENSMUST00000179931 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm23243-201ENSMUST00000180047 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24659-201ENSMUST00000180212 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm24169-201ENSMUST00000180244 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm23689-201ENSMUST00000180354 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm27359-201ENSMUST00000184153 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm27785-201ENSMUST00000184268 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm27466-201ENSMUST00000184396 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Gm27703-201ENSMUST00000184836 110 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Gpr146-202ENSMUST00000053120 1040 ntBASIC24.29■■□□□ 1.48
Cux1P53564 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Cux1P53564 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cux1P53564 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
Cux1P53564 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Cux1P53564 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Cux1P53564 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Cux1P53564 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Cux1P53564 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms