Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.82■□□□□ 0.28
Shmt1P50431 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Shmt1P50431 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Shmt1P50431 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
Shmt1P50431 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm7862-201ENSMUST00000121461 292 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm8825-201ENSMUST00000182565 998 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm4518-201ENSMUST00000182638 718 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm43514-201ENSMUST00000198852 424 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Shmt1P50431 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.81■□□□□ 0.28
Shmt1P50431 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Shmt1P50431 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Shmt1P50431 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.81■□□□□ 0.28
Shmt1P50431 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Shmt1P50431 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC16.8■□□□□ 0.28
Shmt1P50431 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Shmt1P50431 Gm11780-201ENSMUST00000136880 516 ntBASIC16.8■□□□□ 0.28
Shmt1P50431 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC16.8■□□□□ 0.28
Shmt1P50431 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.8■□□□□ 0.28
Shmt1P50431 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Shmt1P50431 Gm8655-201ENSMUST00000221159 852 ntBASIC16.8■□□□□ 0.28
Shmt1P50431 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Shmt1P50431 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.8■□□□□ 0.28
Shmt1P50431 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Shmt1P50431 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Shmt1P50431 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.8■□□□□ 0.28
Shmt1P50431 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Shmt1P50431 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.79■□□□□ 0.28
Shmt1P50431 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Shmt1P50431 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC16.79■□□□□ 0.28
Shmt1P50431 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Shmt1P50431 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms