Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Col3a1P08121 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
Col3a1P08121 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Col3a1P08121 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
Col3a1P08121 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC18.9■□□□□ 0.62
Col3a1P08121 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.9■□□□□ 0.62
Col3a1P08121 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Col3a1P08121 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.9■□□□□ 0.62
Col3a1P08121 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.9■□□□□ 0.62
Col3a1P08121 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC18.9■□□□□ 0.62
Col3a1P08121 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC18.9■□□□□ 0.62
Col3a1P08121 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.9■□□□□ 0.62
Col3a1P08121 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col3a1P08121 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col3a1P08121 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col3a1P08121 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col3a1P08121 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Col3a1P08121 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.89■□□□□ 0.61
Col3a1P08121 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC18.89■□□□□ 0.61
Col3a1P08121 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
Col3a1P08121 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC18.89■□□□□ 0.61
Col3a1P08121 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Col3a1P08121 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col3a1P08121 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
Col3a1P08121 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col3a1P08121 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Col3a1P08121 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Gm7286-201ENSMUST00000182691 1007 ntBASIC18.88■□□□□ 0.61
Col3a1P08121 Gm10576-201ENSMUST00000191927 825 ntBASIC18.88■□□□□ 0.61
Col3a1P08121 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col3a1P08121 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.88■□□□□ 0.61
Col3a1P08121 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC18.88■□□□□ 0.61
Col3a1P08121 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col3a1P08121 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Gm4913-201ENSMUST00000117075 1290 ntBASIC18.87■□□□□ 0.61
Col3a1P08121 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
Col3a1P08121 Gm5177-201ENSMUST00000183092 997 ntBASIC18.87■□□□□ 0.61
Col3a1P08121 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Col3a1P08121 Chchd1-203ENSMUST00000224633 557 ntBASIC18.87■□□□□ 0.61
Col3a1P08121 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Gm7669-201ENSMUST00000210184 1603 ntBASIC18.87■□□□□ 0.61
Col3a1P08121 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.87■□□□□ 0.61
Col3a1P08121 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col3a1P08121 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms