Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chd3B1AR17 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC15.57■□□□□ 0.08
Chd3B1AR17 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chd3B1AR17 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.56■□□□□ 0.08
Chd3B1AR17 Gm11779-201ENSMUST00000118541 368 ntBASIC15.56■□□□□ 0.08
Chd3B1AR17 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Chd3B1AR17 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC15.56■□□□□ 0.08
Chd3B1AR17 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Gm14140-201ENSMUST00000119999 995 ntBASIC15.56■□□□□ 0.08
Chd3B1AR17 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.56■□□□□ 0.08
Chd3B1AR17 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC15.56■□□□□ 0.08
Chd3B1AR17 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC15.56■□□□□ 0.08
Chd3B1AR17 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC15.56■□□□□ 0.08
Chd3B1AR17 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Chd3B1AR17 Gm18856-201ENSMUST00000178096 1374 ntBASIC15.55■□□□□ 0.08
Chd3B1AR17 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC15.55■□□□□ 0.08
Chd3B1AR17 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 AV026068-213ENSMUST00000223675 1171 ntBASIC15.55■□□□□ 0.08
Chd3B1AR17 Gm15590-201ENSMUST00000078419 552 ntBASIC15.55■□□□□ 0.08
Chd3B1AR17 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC15.55■□□□□ 0.08
Chd3B1AR17 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Chd3B1AR17 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC15.54■□□□□ 0.08
Chd3B1AR17 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Chd3B1AR17 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.53■□□□□ 0.08
Chd3B1AR17 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 AC154222.1-201ENSMUST00000223882 475 ntBASIC15.53■□□□□ 0.08
Chd3B1AR17 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms