Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.9□□□□□ -2.55
PCDHB3Q9Y5E6 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.9□□□□□ -2.55
PCDHB3Q9Y5E6 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.9□□□□□ -2.55
PCDHB3Q9Y5E6 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.91□□□□□ -2.56
PCDHB3Q9Y5E6 RNU6-620P-201ENST00000384017 96 ntBASIC-0.94□□□□□ -2.56
PCDHB3Q9Y5E6 RNA5SP180-201ENST00000516181 101 ntBASIC-0.94□□□□□ -2.56
PCDHB3Q9Y5E6 MIR3165-201ENST00000579874 75 ntBASIC-0.95□□□□□ -2.56
PCDHB3Q9Y5E6 RNU6-1043P-201ENST00000410355 99 ntBASIC-0.96□□□□□ -2.56
PCDHB3Q9Y5E6 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.96□□□□□ -2.56
PCDHB3Q9Y5E6 MIRLET7A2-201ENST00000362105 72 ntBASIC-0.97□□□□□ -2.56
PCDHB3Q9Y5E6 RNU6-1024P-201ENST00000384199 107 ntBASIC-0.97□□□□□ -2.56
PCDHB3Q9Y5E6 RNU6-422P-201ENST00000384632 107 ntBASIC-0.97□□□□□ -2.56
PCDHB3Q9Y5E6 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.97□□□□□ -2.56
PCDHB3Q9Y5E6 MIR365A-201ENST00000362260 87 ntBASIC-0.98□□□□□ -2.57
PCDHB3Q9Y5E6 MIR1285-2-201ENST00000408311 88 ntBASIC-0.99□□□□□ -2.57
PCDHB3Q9Y5E6 SNORD114-3-201ENST00000364969 75 ntBASIC-1□□□□□ -2.57
PCDHB3Q9Y5E6 MIR1207-201ENST00000408249 87 ntBASIC-1.01□□□□□ -2.57
PCDHB3Q9Y5E6 MIR4520-1-201ENST00000582609 70 ntBASIC-1.01□□□□□ -2.57
PCDHB3Q9Y5E6 MIR4441-201ENST00000582623 100 ntBASIC-1.01□□□□□ -2.57
PCDHB3Q9Y5E6 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.02□□□□□ -2.57
PCDHB3Q9Y5E6 MIR4306-201ENST00000583390 91 ntBASIC-1.06□□□□□ -2.58
PCDHB3Q9Y5E6 MIR487B-201ENST00000385021 84 ntBASIC-1.07□□□□□ -2.58
PCDHB3Q9Y5E6 RNY4P27-201ENST00000363341 96 ntBASIC-1.08□□□□□ -2.58
PCDHB3Q9Y5E6 MIR1246-201ENST00000636535 73 ntBASIC-1.12□□□□□ -2.59
PCDHB3Q9Y5E6 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.13□□□□□ -2.59
PCDHB3Q9Y5E6 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.14□□□□□ -2.59
PCDHB3Q9Y5E6 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.15□□□□□ -2.59
PCDHB3Q9Y5E6 RNA5SP86-201ENST00000390869 98 ntBASIC-1.15□□□□□ -2.59
PCDHB3Q9Y5E6 RNU6-706P-201ENST00000517229 104 ntBASIC-1.16□□□□□ -2.6
PCDHB3Q9Y5E6 RNU6-737P-201ENST00000365370 107 ntBASIC-1.19□□□□□ -2.6
PCDHB3Q9Y5E6 RNU6-226P-201ENST00000363778 107 ntBASIC-1.2□□□□□ -2.6
PCDHB3Q9Y5E6 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.2□□□□□ -2.6
PCDHB3Q9Y5E6 HLA-S-202ENST00000425174 53 ntBASIC-1.26□□□□□ -2.61
PCDHB3Q9Y5E6 MIR124-1-201ENST00000385275 85 ntBASIC-1.28□□□□□ -2.61
PCDHB3Q9Y5E6 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.29□□□□□ -2.62
PCDHB3Q9Y5E6 MIR5591-201ENST00000578248 65 ntBASIC-1.3□□□□□ -2.62
PCDHB3Q9Y5E6 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.31□□□□□ -2.62
PCDHB3Q9Y5E6 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.31□□□□□ -2.62
PCDHB3Q9Y5E6 RNU6-627P-201ENST00000364032 102 ntBASIC-1.32□□□□□ -2.62
PCDHB3Q9Y5E6 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.32□□□□□ -2.62
PCDHB3Q9Y5E6 MIR4770-201ENST00000579149 58 ntBASIC-1.32□□□□□ -2.62
PCDHB3Q9Y5E6 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.36□□□□□ -2.63
PCDHB3Q9Y5E6 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.36□□□□□ -2.63
PCDHB3Q9Y5E6 MIR496-201ENST00000385226 102 ntBASIC-1.37□□□□□ -2.63
PCDHB3Q9Y5E6 AL731768.1-201ENST00000603124 139 ntBASIC-1.38□□□□□ -2.63
PCDHB3Q9Y5E6 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.39□□□□□ -2.63
PCDHB3Q9Y5E6 AC108019.1-201ENST00000512540 175 ntBASIC-1.39□□□□□ -2.63
PCDHB3Q9Y5E6 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.39□□□□□ -2.63
PCDHB3Q9Y5E6 RNU6-119P-201ENST00000364882 107 ntBASIC-1.41□□□□□ -2.64
PCDHB3Q9Y5E6 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.41□□□□□ -2.64
PCDHB3Q9Y5E6 MIR4756-201ENST00000577874 78 ntBASIC-1.44□□□□□ -2.64
PCDHB3Q9Y5E6 RNY4P7-201ENST00000364600 96 ntBASIC-1.46□□□□□ -2.64
PCDHB3Q9Y5E6 MIR4748-201ENST00000578076 82 ntBASIC-1.46□□□□□ -2.64
PCDHB3Q9Y5E6 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.47□□□□□ -2.64
PCDHB3Q9Y5E6 MIR548AH-201ENST00000637109 76 ntBASIC-1.47□□□□□ -2.64
PCDHB3Q9Y5E6 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.48□□□□□ -2.65
PCDHB3Q9Y5E6 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.48□□□□□ -2.65
PCDHB3Q9Y5E6 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.48□□□□□ -2.65
PCDHB3Q9Y5E6 RNU6-118P-201ENST00000516552 102 ntBASIC-1.52□□□□□ -2.65
PCDHB3Q9Y5E6 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.53□□□□□ -2.65
PCDHB3Q9Y5E6 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.54□□□□□ -2.66
PCDHB3Q9Y5E6 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.55□□□□□ -2.66
PCDHB3Q9Y5E6 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.56□□□□□ -2.66
PCDHB3Q9Y5E6 RNA5SP93-201ENST00000362525 114 ntBASIC-1.57□□□□□ -2.66
PCDHB3Q9Y5E6 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.57□□□□□ -2.66
PCDHB3Q9Y5E6 SNORD18.1-201ENST00000363807 70 ntBASIC-1.58□□□□□ -2.66
PCDHB3Q9Y5E6 SNORD54-201ENST00000459159 67 ntBASIC-1.6□□□□□ -2.67
PCDHB3Q9Y5E6 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.61□□□□□ -2.67
PCDHB3Q9Y5E6 RNY4P9-201ENST00000363194 97 ntBASIC-1.62□□□□□ -2.67
PCDHB3Q9Y5E6 MIR664B-201ENST00000626756 61 ntBASIC-1.62□□□□□ -2.67
PCDHB3Q9Y5E6 AL359920.1-201ENST00000618332 176 ntBASIC-1.63□□□□□ -2.67
PCDHB3Q9Y5E6 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.64□□□□□ -2.67
PCDHB3Q9Y5E6 SNORD115-45-201ENST00000391078 81 ntBASIC-1.64□□□□□ -2.67
PCDHB3Q9Y5E6 RNY4-201ENST00000516507 96 ntBASIC-1.66□□□□□ -2.68
PCDHB3Q9Y5E6 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.67□□□□□ -2.68
PCDHB3Q9Y5E6 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.67□□□□□ -2.68
PCDHB3Q9Y5E6 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.7□□□□□ -2.68
PCDHB3Q9Y5E6 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.72□□□□□ -2.68
PCDHB3Q9Y5E6 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.75□□□□□ -2.69
PCDHB3Q9Y5E6 RNU6-194P-201ENST00000363862 105 ntBASIC-1.76□□□□□ -2.69
PCDHB3Q9Y5E6 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.76□□□□□ -2.69
PCDHB3Q9Y5E6 MIR3139-201ENST00000579145 76 ntBASIC-1.76□□□□□ -2.69
PCDHB3Q9Y5E6 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.78□□□□□ -2.69
PCDHB3Q9Y5E6 RNA5SP405-201ENST00000363059 114 ntBASIC-1.81□□□□□ -2.7
PCDHB3Q9Y5E6 MT-TM-201ENST00000387377 68 ntBASIC-1.83□□□□□ -2.7
PCDHB3Q9Y5E6 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.89□□□□□ -2.71
PCDHB3Q9Y5E6 RNY4P25-201ENST00000459254 96 ntBASIC-1.9□□□□□ -2.71
PCDHB3Q9Y5E6 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.9□□□□□ -2.71
PCDHB3Q9Y5E6 RNU6-892P-201ENST00000410335 99 ntBASIC-1.93□□□□□ -2.72
PCDHB3Q9Y5E6 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.97□□□□□ -2.72
PCDHB3Q9Y5E6 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.97□□□□□ -2.72
PCDHB3Q9Y5E6 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.99□□□□□ -2.73
PCDHB3Q9Y5E6 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-2.02□□□□□ -2.73
PCDHB3Q9Y5E6 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.02□□□□□ -2.73
PCDHB3Q9Y5E6 MIR5693-201ENST00000577722 73 ntBASIC-2.06□□□□□ -2.74
PCDHB3Q9Y5E6 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.09□□□□□ -2.74
PCDHB3Q9Y5E6 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.12□□□□□ -2.75
PCDHB3Q9Y5E6 RNU4-85P-201ENST00000364675 123 ntBASIC-2.13□□□□□ -2.75
PCDHB3Q9Y5E6 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.13□□□□□ -2.75
PCDHB3Q9Y5E6 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.14□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms