Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-930P-201ENST00000390938 100 ntBASIC-1.45□□□□□ -2.64
ZNF540Q8NDQ6 MIR4748-201ENST00000578076 82 ntBASIC-1.45□□□□□ -2.64
ZNF540Q8NDQ6 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.46□□□□□ -2.64
ZNF540Q8NDQ6 RNA5SP224-201ENST00000365069 126 ntBASIC-1.47□□□□□ -2.64
ZNF540Q8NDQ6 RNU6-59P-201ENST00000384787 107 ntBASIC-1.47□□□□□ -2.64
ZNF540Q8NDQ6 RNU6-345P-201ENST00000517001 107 ntBASIC-1.47□□□□□ -2.64
ZNF540Q8NDQ6 RNA5SP405-201ENST00000363059 114 ntBASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 RNU6-118P-201ENST00000516552 102 ntBASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 RNU6-822P-201ENST00000362707 106 ntBASIC-1.49□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 MTND4LP19-201ENST00000403051 166 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 RNU6-141P-201ENST00000410499 105 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.51□□□□□ -2.65
ZNF540Q8NDQ6 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.52□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.53□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.54□□□□□ -2.66
ZNF540Q8NDQ6 RNU6-194P-201ENST00000363862 105 ntBASIC-1.54□□□□□ -2.66
ZNF540Q8NDQ6 SNORD114-3-201ENST00000364969 75 ntBASIC-1.54□□□□□ -2.66
ZNF540Q8NDQ6 MIR545-201ENST00000385085 106 ntBASIC-1.55□□□□□ -2.66
ZNF540Q8NDQ6 RNU6-836P-201ENST00000362920 107 ntBASIC-1.56□□□□□ -2.66
ZNF540Q8NDQ6 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.56□□□□□ -2.66
ZNF540Q8NDQ6 SNORD45C-201ENST00000383893 79 ntBASIC-1.57□□□□□ -2.66
ZNF540Q8NDQ6 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.57□□□□□ -2.66
ZNF540Q8NDQ6 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.58□□□□□ -2.66
ZNF540Q8NDQ6 MIR656-201ENST00000385224 78 ntBASIC-1.58□□□□□ -2.66
ZNF540Q8NDQ6 SNORD115.2-201ENST00000391126 59 ntBASIC-1.58□□□□□ -2.66
ZNF540Q8NDQ6 RNY4P27-201ENST00000363341 96 ntBASIC-1.59□□□□□ -2.66
ZNF540Q8NDQ6 MIR1207-201ENST00000408249 87 ntBASIC-1.62□□□□□ -2.67
ZNF540Q8NDQ6 RNU6-854P-201ENST00000364036 107 ntBASIC-1.63□□□□□ -2.67
ZNF540Q8NDQ6 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.63□□□□□ -2.67
ZNF540Q8NDQ6 MIR3139-201ENST00000579145 76 ntBASIC-1.64□□□□□ -2.67
ZNF540Q8NDQ6 RNY4P9-201ENST00000363194 97 ntBASIC-1.66□□□□□ -2.68
ZNF540Q8NDQ6 AL731768.1-201ENST00000603124 139 ntBASIC-1.66□□□□□ -2.68
ZNF540Q8NDQ6 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.68□□□□□ -2.68
ZNF540Q8NDQ6 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.68□□□□□ -2.68
ZNF540Q8NDQ6 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.68□□□□□ -2.68
ZNF540Q8NDQ6 RNU6-987P-201ENST00000384759 104 ntBASIC-1.69□□□□□ -2.68
ZNF540Q8NDQ6 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.69□□□□□ -2.68
ZNF540Q8NDQ6 RNU4-37P-201ENST00000410214 84 ntBASIC-1.7□□□□□ -2.68
ZNF540Q8NDQ6 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.7□□□□□ -2.68
ZNF540Q8NDQ6 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.71□□□□□ -2.68
ZNF540Q8NDQ6 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.72□□□□□ -2.68
ZNF540Q8NDQ6 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.73□□□□□ -2.69
ZNF540Q8NDQ6 MT-TM-201ENST00000387377 68 ntBASIC-1.73□□□□□ -2.69
ZNF540Q8NDQ6 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.76□□□□□ -2.69
ZNF540Q8NDQ6 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.77□□□□□ -2.69
ZNF540Q8NDQ6 RNU6-737P-201ENST00000365370 107 ntBASIC-1.78□□□□□ -2.69
ZNF540Q8NDQ6 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.79□□□□□ -2.7
ZNF540Q8NDQ6 AL359920.1-201ENST00000618332 176 ntBASIC-1.82□□□□□ -2.7
ZNF540Q8NDQ6 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.83□□□□□ -2.7
ZNF540Q8NDQ6 MIR124-1-201ENST00000385275 85 ntBASIC-1.84□□□□□ -2.7
ZNF540Q8NDQ6 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.84□□□□□ -2.7
ZNF540Q8NDQ6 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 MIR496-201ENST00000385226 102 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 SNORD111B-201ENST00000408587 80 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 MIR5693-201ENST00000577722 73 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.87□□□□□ -2.71
ZNF540Q8NDQ6 RNU6-119P-201ENST00000364882 107 ntBASIC-1.88□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.88□□□□□ -2.71
ZNF540Q8NDQ6 U6.103-201ENST00000637085 61 ntBASIC-1.88□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.89□□□□□ -2.71
ZNF540Q8NDQ6 RNY4P25-201ENST00000459254 96 ntBASIC-1.89□□□□□ -2.71
ZNF540Q8NDQ6 MIR548AH-201ENST00000637109 76 ntBASIC-1.89□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.9□□□□□ -2.71
ZNF540Q8NDQ6 SNORD115-45-201ENST00000391078 81 ntBASIC-1.91□□□□□ -2.72
ZNF540Q8NDQ6 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.92□□□□□ -2.72
ZNF540Q8NDQ6 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.92□□□□□ -2.72
ZNF540Q8NDQ6 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.94□□□□□ -2.72
ZNF540Q8NDQ6 RNU6-485P-201ENST00000363475 107 ntBASIC-1.94□□□□□ -2.72
ZNF540Q8NDQ6 RNU6-422P-201ENST00000384632 107 ntBASIC-1.97□□□□□ -2.72
ZNF540Q8NDQ6 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.98□□□□□ -2.73
ZNF540Q8NDQ6 RNU6-230P-201ENST00000362457 104 ntBASIC-1.99□□□□□ -2.73
ZNF540Q8NDQ6 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.01□□□□□ -2.73
ZNF540Q8NDQ6 SNORD114-13-201ENST00000364377 74 ntBASIC-2.01□□□□□ -2.73
ZNF540Q8NDQ6 RNU6-724P-201ENST00000390958 105 ntBASIC-2.02□□□□□ -2.73
ZNF540Q8NDQ6 SNORD54-201ENST00000459159 67 ntBASIC-2.03□□□□□ -2.73
ZNF540Q8NDQ6 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.07□□□□□ -2.74
ZNF540Q8NDQ6 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.07□□□□□ -2.74
ZNF540Q8NDQ6 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.07□□□□□ -2.74
ZNF540Q8NDQ6 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.1□□□□□ -2.75
ZNF540Q8NDQ6 RNA5SP93-201ENST00000362525 114 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 RNY4P7-201ENST00000364600 96 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 RNU6-133P-201ENST00000383989 107 ntBASIC-2.16□□□□□ -2.76
ZNF540Q8NDQ6 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.2□□□□□ -2.76
ZNF540Q8NDQ6 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.23□□□□□ -2.77
ZNF540Q8NDQ6 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.23□□□□□ -2.77
ZNF540Q8NDQ6 RNU6-620P-201ENST00000384017 96 ntBASIC-2.24□□□□□ -2.77
ZNF540Q8NDQ6 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-2.24□□□□□ -2.77
ZNF540Q8NDQ6 RNU6-894P-201ENST00000517094 105 ntBASIC-2.24□□□□□ -2.77
ZNF540Q8NDQ6 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.27□□□□□ -2.77
ZNF540Q8NDQ6 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.33□□□□□ -2.78
ZNF540Q8NDQ6 MIR509-1-201ENST00000385265 94 ntBASIC-2.34□□□□□ -2.78
ZNF540Q8NDQ6 MIR509-2-201ENST00000390724 91 ntBASIC-2.34□□□□□ -2.78
ZNF540Q8NDQ6 RNY4-201ENST00000516507 96 ntBASIC-2.34□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 249.3 ms