Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-892P-201ENST00000410335 99 ntBASIC-0.46□□□□□ -2.48
NPAS3Q8IXF0 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.47□□□□□ -2.48
NPAS3Q8IXF0 MIR601-201ENST00000385256 79 ntBASIC-0.48□□□□□ -2.49
NPAS3Q8IXF0 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.49□□□□□ -2.49
NPAS3Q8IXF0 SNORD83B-201ENST00000386745 93 ntBASIC-0.49□□□□□ -2.49
NPAS3Q8IXF0 RNU6-226P-201ENST00000363778 107 ntBASIC-0.5□□□□□ -2.49
NPAS3Q8IXF0 RNU6-706P-201ENST00000517229 104 ntBASIC-0.5□□□□□ -2.49
NPAS3Q8IXF0 MIR378F-201ENST00000578143 78 ntBASIC-0.5□□□□□ -2.49
NPAS3Q8IXF0 MIR548AH-201ENST00000637109 76 ntBASIC-0.5□□□□□ -2.49
NPAS3Q8IXF0 MIR587-201ENST00000384845 96 ntBASIC-0.52□□□□□ -2.49
NPAS3Q8IXF0 MIR3115-201ENST00000577915 68 ntBASIC-0.52□□□□□ -2.49
NPAS3Q8IXF0 RNU6-1161P-201ENST00000516176 102 ntBASIC-0.53□□□□□ -2.49
NPAS3Q8IXF0 SCARNA17-201ENST00000516183 144 ntBASIC-0.53□□□□□ -2.49
NPAS3Q8IXF0 MIR4320-201ENST00000636981 65 ntBASIC-0.53□□□□□ -2.49
NPAS3Q8IXF0 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.54□□□□□ -2.5
NPAS3Q8IXF0 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.57□□□□□ -2.5
NPAS3Q8IXF0 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.57□□□□□ -2.5
NPAS3Q8IXF0 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.57□□□□□ -2.5
NPAS3Q8IXF0 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.57□□□□□ -2.5
NPAS3Q8IXF0 Y_RNA.663-201ENST00000516043 101 ntBASIC-0.58□□□□□ -2.5
NPAS3Q8IXF0 U4.2-201ENST00000618561 85 ntBASIC-0.59□□□□□ -2.5
NPAS3Q8IXF0 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.6□□□□□ -2.51
NPAS3Q8IXF0 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.61□□□□□ -2.51
NPAS3Q8IXF0 MIR1285-2-201ENST00000408311 88 ntBASIC-0.61□□□□□ -2.51
NPAS3Q8IXF0 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.61□□□□□ -2.51
NPAS3Q8IXF0 MIR1207-201ENST00000408249 87 ntBASIC-0.63□□□□□ -2.51
NPAS3Q8IXF0 SNORD115-45-201ENST00000391078 81 ntBASIC-0.64□□□□□ -2.51
NPAS3Q8IXF0 MIR3165-201ENST00000579874 75 ntBASIC-0.64□□□□□ -2.51
NPAS3Q8IXF0 Y_RNA.137-201ENST00000363455 112 ntBASIC-0.65□□□□□ -2.51
NPAS3Q8IXF0 AL731768.1-201ENST00000603124 139 ntBASIC-0.65□□□□□ -2.51
NPAS3Q8IXF0 MIR1246-201ENST00000636535 73 ntBASIC-0.65□□□□□ -2.51
NPAS3Q8IXF0 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.66□□□□□ -2.52
NPAS3Q8IXF0 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.67□□□□□ -2.52
NPAS3Q8IXF0 RNA5SP86-201ENST00000390869 98 ntBASIC-0.67□□□□□ -2.52
NPAS3Q8IXF0 MIR365A-201ENST00000362260 87 ntBASIC-0.68□□□□□ -2.52
NPAS3Q8IXF0 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.69□□□□□ -2.52
NPAS3Q8IXF0 SNORD114-3-201ENST00000364969 75 ntBASIC-0.7□□□□□ -2.52
NPAS3Q8IXF0 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.71□□□□□ -2.52
NPAS3Q8IXF0 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.72□□□□□ -2.52
NPAS3Q8IXF0 HLA-S-202ENST00000425174 53 ntBASIC-0.72□□□□□ -2.52
NPAS3Q8IXF0 RNA5SP180-201ENST00000516181 101 ntBASIC-0.72□□□□□ -2.52
NPAS3Q8IXF0 RNU6-1277P-201ENST00000364561 107 ntBASIC-0.73□□□□□ -2.53
NPAS3Q8IXF0 MIR4441-201ENST00000582623 100 ntBASIC-0.73□□□□□ -2.53
NPAS3Q8IXF0 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.74□□□□□ -2.53
NPAS3Q8IXF0 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
NPAS3Q8IXF0 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.77□□□□□ -2.53
NPAS3Q8IXF0 MIR4306-201ENST00000583390 91 ntBASIC-0.77□□□□□ -2.53
NPAS3Q8IXF0 MIR4756-201ENST00000577874 78 ntBASIC-0.78□□□□□ -2.53
NPAS3Q8IXF0 RNY4P27-201ENST00000363341 96 ntBASIC-0.8□□□□□ -2.54
NPAS3Q8IXF0 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.8□□□□□ -2.54
NPAS3Q8IXF0 RNU6-118P-201ENST00000516552 102 ntBASIC-0.8□□□□□ -2.54
NPAS3Q8IXF0 MIR5591-201ENST00000578248 65 ntBASIC-0.8□□□□□ -2.54
NPAS3Q8IXF0 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.81□□□□□ -2.54
NPAS3Q8IXF0 Y_RNA.652-201ENST00000458902 102 ntBASIC-0.81□□□□□ -2.54
NPAS3Q8IXF0 AC108019.1-201ENST00000512540 175 ntBASIC-0.81□□□□□ -2.54
NPAS3Q8IXF0 MIR496-201ENST00000385226 102 ntBASIC-0.84□□□□□ -2.54
NPAS3Q8IXF0 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-0.84□□□□□ -2.54
NPAS3Q8IXF0 AL359920.1-201ENST00000618332 176 ntBASIC-0.84□□□□□ -2.54
NPAS3Q8IXF0 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.85□□□□□ -2.55
NPAS3Q8IXF0 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.85□□□□□ -2.55
NPAS3Q8IXF0 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.87□□□□□ -2.55
NPAS3Q8IXF0 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.87□□□□□ -2.55
NPAS3Q8IXF0 SNX3P1Y-201ENST00000615757 176 ntBASIC-0.87□□□□□ -2.55
NPAS3Q8IXF0 RNY4P9-201ENST00000363194 97 ntBASIC-0.88□□□□□ -2.55
NPAS3Q8IXF0 Y_RNA.225-201ENST00000364326 97 ntBASIC-0.88□□□□□ -2.55
NPAS3Q8IXF0 MIR4748-201ENST00000578076 82 ntBASIC-0.88□□□□□ -2.55
NPAS3Q8IXF0 RNA5SP93-201ENST00000362525 114 ntBASIC-0.89□□□□□ -2.55
NPAS3Q8IXF0 MIRLET7A3-201ENST00000362116 74 ntBASIC-0.9□□□□□ -2.55
NPAS3Q8IXF0 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.9□□□□□ -2.55
NPAS3Q8IXF0 Y_RNA.612-201ENST00000410717 95 ntBASIC-0.9□□□□□ -2.55
NPAS3Q8IXF0 MIR4770-201ENST00000579149 58 ntBASIC-0.9□□□□□ -2.55
NPAS3Q8IXF0 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.91□□□□□ -2.56
NPAS3Q8IXF0 SNORD18.1-201ENST00000363807 70 ntBASIC-0.93□□□□□ -2.56
NPAS3Q8IXF0 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.94□□□□□ -2.56
NPAS3Q8IXF0 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.97□□□□□ -2.56
NPAS3Q8IXF0 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.98□□□□□ -2.57
NPAS3Q8IXF0 MIR3139-201ENST00000579145 76 ntBASIC-0.98□□□□□ -2.57
NPAS3Q8IXF0 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.99□□□□□ -2.57
NPAS3Q8IXF0 RNA5SP449-201ENST00000516871 130 ntBASIC-0.99□□□□□ -2.57
NPAS3Q8IXF0 RNY4P25-201ENST00000459254 96 ntBASIC-1□□□□□ -2.57
NPAS3Q8IXF0 MT-TM-201ENST00000387377 68 ntBASIC-1.01□□□□□ -2.57
NPAS3Q8IXF0 RNU6-194P-201ENST00000363862 105 ntBASIC-1.02□□□□□ -2.57
NPAS3Q8IXF0 RNU6-119P-201ENST00000364882 107 ntBASIC-1.02□□□□□ -2.57
NPAS3Q8IXF0 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.02□□□□□ -2.57
NPAS3Q8IXF0 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.03□□□□□ -2.57
NPAS3Q8IXF0 Y_RNA.165-201ENST00000363721 102 ntBASIC-1.05□□□□□ -2.58
NPAS3Q8IXF0 MIR664B-201ENST00000626756 61 ntBASIC-1.05□□□□□ -2.58
NPAS3Q8IXF0 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.06□□□□□ -2.58
NPAS3Q8IXF0 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.08□□□□□ -2.58
NPAS3Q8IXF0 RNU4-85P-201ENST00000364675 123 ntBASIC-1.12□□□□□ -2.59
NPAS3Q8IXF0 SNORD54-201ENST00000459159 67 ntBASIC-1.13□□□□□ -2.59
NPAS3Q8IXF0 MIR5693-201ENST00000577722 73 ntBASIC-1.13□□□□□ -2.59
NPAS3Q8IXF0 RNA5SP405-201ENST00000363059 114 ntBASIC-1.14□□□□□ -2.59
NPAS3Q8IXF0 RNY4P7-201ENST00000364600 96 ntBASIC-1.15□□□□□ -2.59
NPAS3Q8IXF0 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.16□□□□□ -2.6
NPAS3Q8IXF0 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.16□□□□□ -2.6
NPAS3Q8IXF0 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.17□□□□□ -2.6
NPAS3Q8IXF0 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.17□□□□□ -2.6
NPAS3Q8IXF0 RNY4-201ENST00000516507 96 ntBASIC-1.18□□□□□ -2.6
NPAS3Q8IXF0 RNU6-230P-201ENST00000362457 104 ntBASIC-1.19□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 253.8 ms