Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.47□□□□□ -2.64
RNF4P78317 AC097484.2-201ENST00000509147 251 ntBASIC-1.47□□□□□ -2.64
RNF4P78317 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.48□□□□□ -2.65
RNF4P78317 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.48□□□□□ -2.65
RNF4P78317 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.48□□□□□ -2.65
RNF4P78317 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.49□□□□□ -2.65
RNF4P78317 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.49□□□□□ -2.65
RNF4P78317 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.49□□□□□ -2.65
RNF4P78317 MIR1254-1-201ENST00000408257 97 ntBASIC-1.49□□□□□ -2.65
RNF4P78317 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.49□□□□□ -2.65
RNF4P78317 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.5□□□□□ -2.65
RNF4P78317 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.5□□□□□ -2.65
RNF4P78317 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.5□□□□□ -2.65
RNF4P78317 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.5□□□□□ -2.65
RNF4P78317 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.5□□□□□ -2.65
RNF4P78317 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.5□□□□□ -2.65
RNF4P78317 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.51□□□□□ -2.65
RNF4P78317 RNY4P27-201ENST00000363341 96 ntBASIC-1.54□□□□□ -2.66
RNF4P78317 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.55□□□□□ -2.66
RNF4P78317 U6.103-201ENST00000637085 61 ntBASIC-1.55□□□□□ -2.66
RNF4P78317 RNA5SP405-201ENST00000363059 114 ntBASIC-1.56□□□□□ -2.66
RNF4P78317 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.56□□□□□ -2.66
RNF4P78317 FTX_4.1-201ENST00000616291 147 ntBASIC-1.56□□□□□ -2.66
RNF4P78317 RNU6-118P-201ENST00000516552 102 ntBASIC-1.57□□□□□ -2.66
RNF4P78317 MIR4748-201ENST00000578076 82 ntBASIC-1.57□□□□□ -2.66
RNF4P78317 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.58□□□□□ -2.66
RNF4P78317 RNU6-194P-201ENST00000363862 105 ntBASIC-1.6□□□□□ -2.67
RNF4P78317 MIR3139-201ENST00000579145 76 ntBASIC-1.61□□□□□ -2.67
RNF4P78317 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.62□□□□□ -2.67
RNF4P78317 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.62□□□□□ -2.67
RNF4P78317 RNA5SP224-201ENST00000365069 126 ntBASIC-1.62□□□□□ -2.67
RNF4P78317 RNU6-345P-201ENST00000517001 107 ntBASIC-1.62□□□□□ -2.67
RNF4P78317 RNU6-836P-201ENST00000362920 107 ntBASIC-1.63□□□□□ -2.67
RNF4P78317 RNU6-724P-201ENST00000390958 105 ntBASIC-1.64□□□□□ -2.67
RNF4P78317 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.66□□□□□ -2.68
RNF4P78317 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.69□□□□□ -2.68
RNF4P78317 MT-TM-201ENST00000387377 68 ntBASIC-1.7□□□□□ -2.68
RNF4P78317 SNORD45C-201ENST00000383893 79 ntBASIC-1.71□□□□□ -2.68
RNF4P78317 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.71□□□□□ -2.68
RNF4P78317 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.71□□□□□ -2.68
RNF4P78317 MIR656-201ENST00000385224 78 ntBASIC-1.73□□□□□ -2.69
RNF4P78317 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.75□□□□□ -2.69
RNF4P78317 RNU6-854P-201ENST00000364036 107 ntBASIC-1.76□□□□□ -2.69
RNF4P78317 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.76□□□□□ -2.69
RNF4P78317 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.77□□□□□ -2.69
RNF4P78317 RNY4P9-201ENST00000363194 97 ntBASIC-1.79□□□□□ -2.7
RNF4P78317 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.79□□□□□ -2.7
RNF4P78317 RNU6-119P-201ENST00000364882 107 ntBASIC-1.8□□□□□ -2.7
RNF4P78317 MIR496-201ENST00000385226 102 ntBASIC-1.8□□□□□ -2.7
RNF4P78317 SNORD111B-201ENST00000408587 80 ntBASIC-1.8□□□□□ -2.7
RNF4P78317 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.81□□□□□ -2.7
RNF4P78317 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.81□□□□□ -2.7
RNF4P78317 AL731768.1-201ENST00000603124 139 ntBASIC-1.81□□□□□ -2.7
RNF4P78317 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.81□□□□□ -2.7
RNF4P78317 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.84□□□□□ -2.7
RNF4P78317 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.86□□□□□ -2.71
RNF4P78317 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.87□□□□□ -2.71
RNF4P78317 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-1.87□□□□□ -2.71
RNF4P78317 RNU6-737P-201ENST00000365370 107 ntBASIC-1.89□□□□□ -2.71
RNF4P78317 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.92□□□□□ -2.72
RNF4P78317 MIR124-1-201ENST00000385275 85 ntBASIC-1.94□□□□□ -2.72
RNF4P78317 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.96□□□□□ -2.72
RNF4P78317 RNU6-485P-201ENST00000363475 107 ntBASIC-1.96□□□□□ -2.72
RNF4P78317 SNORD54-201ENST00000459159 67 ntBASIC-1.96□□□□□ -2.72
RNF4P78317 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.97□□□□□ -2.72
RNF4P78317 RNU6-230P-201ENST00000362457 104 ntBASIC-1.98□□□□□ -2.73
RNF4P78317 MIR5693-201ENST00000577722 73 ntBASIC-1.98□□□□□ -2.73
RNF4P78317 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.99□□□□□ -2.73
RNF4P78317 RNY4P7-201ENST00000364600 96 ntBASIC-1.99□□□□□ -2.73
RNF4P78317 AL359920.1-201ENST00000618332 176 ntBASIC-1.99□□□□□ -2.73
RNF4P78317 RNU6-1161P-201ENST00000516176 102 ntBASIC-2□□□□□ -2.73
RNF4P78317 RNA5SP93-201ENST00000362525 114 ntBASIC-2.01□□□□□ -2.73
RNF4P78317 SNORD115-45-201ENST00000391078 81 ntBASIC-2.02□□□□□ -2.73
RNF4P78317 RNY4P25-201ENST00000459254 96 ntBASIC-2.02□□□□□ -2.73
RNF4P78317 MIR548AH-201ENST00000637109 76 ntBASIC-2.02□□□□□ -2.73
RNF4P78317 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.03□□□□□ -2.73
RNF4P78317 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.04□□□□□ -2.74
RNF4P78317 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.05□□□□□ -2.74
RNF4P78317 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.06□□□□□ -2.74
RNF4P78317 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.06□□□□□ -2.74
RNF4P78317 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.09□□□□□ -2.74
RNF4P78317 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.11□□□□□ -2.75
RNF4P78317 RNU6-422P-201ENST00000384632 107 ntBASIC-2.11□□□□□ -2.75
RNF4P78317 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.11□□□□□ -2.75
RNF4P78317 RNU6-133P-201ENST00000383989 107 ntBASIC-2.14□□□□□ -2.75
RNF4P78317 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.14□□□□□ -2.75
RNF4P78317 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.15□□□□□ -2.75
RNF4P78317 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.15□□□□□ -2.75
RNF4P78317 SNORD114-13-201ENST00000364377 74 ntBASIC-2.17□□□□□ -2.76
RNF4P78317 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.19□□□□□ -2.76
RNF4P78317 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.19□□□□□ -2.76
RNF4P78317 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.2□□□□□ -2.76
RNF4P78317 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.25□□□□□ -2.77
RNF4P78317 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.26□□□□□ -2.77
RNF4P78317 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.27□□□□□ -2.77
RNF4P78317 RNY4-201ENST00000516507 96 ntBASIC-2.28□□□□□ -2.77
RNF4P78317 RNU6-803P-201ENST00000516034 102 ntBASIC-2.3□□□□□ -2.78
RNF4P78317 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.32□□□□□ -2.78
RNF4P78317 MIR509-1-201ENST00000385265 94 ntBASIC-2.34□□□□□ -2.78
RNF4P78317 MIR509-2-201ENST00000390724 91 ntBASIC-2.34□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 208.1 ms