Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 RNA5SP405-201ENST00000363059 114 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 SNORD113-3-201ENST00000364830 72 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 MT-TM-201ENST00000387377 68 ntBASIC-1.68□□□□□ -2.68
HOXD4P09016 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.69□□□□□ -2.68
HOXD4P09016 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.69□□□□□ -2.68
HOXD4P09016 RNU6-822P-201ENST00000362707 106 ntBASIC-1.7□□□□□ -2.68
HOXD4P09016 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.7□□□□□ -2.68
HOXD4P09016 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.7□□□□□ -2.68
HOXD4P09016 RNU6-930P-201ENST00000390938 100 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.71□□□□□ -2.68
HOXD4P09016 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.72□□□□□ -2.68
HOXD4P09016 MIR1254-1-201ENST00000408257 97 ntBASIC-1.73□□□□□ -2.69
HOXD4P09016 RNU6-194P-201ENST00000363862 105 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 Y_RNA.421-201ENST00000384052 101 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 MIR548F3-201ENST00000408509 87 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.74□□□□□ -2.69
HOXD4P09016 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.75□□□□□ -2.69
HOXD4P09016 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.75□□□□□ -2.69
HOXD4P09016 RNU6-986P-201ENST00000363133 102 ntBASIC-1.76□□□□□ -2.69
HOXD4P09016 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.76□□□□□ -2.69
HOXD4P09016 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.77□□□□□ -2.69
HOXD4P09016 RNU6-345P-201ENST00000517001 107 ntBASIC-1.77□□□□□ -2.69
HOXD4P09016 FTX_4.1-201ENST00000616291 147 ntBASIC-1.77□□□□□ -2.69
HOXD4P09016 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.77□□□□□ -2.69
HOXD4P09016 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 SNORD115.2-201ENST00000391126 59 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 RNY4-201ENST00000516507 96 ntBASIC-1.82□□□□□ -2.7
HOXD4P09016 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.83□□□□□ -2.7
HOXD4P09016 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 RNU6-59P-201ENST00000384787 107 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.84□□□□□ -2.7
HOXD4P09016 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 RNA5SP224-201ENST00000365069 126 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 MIR545-201ENST00000385085 106 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 MIR4748-201ENST00000578076 82 ntBASIC-1.86□□□□□ -2.71
HOXD4P09016 RNU6-836P-201ENST00000362920 107 ntBASIC-1.89□□□□□ -2.71
HOXD4P09016 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.91□□□□□ -2.72
HOXD4P09016 RNU6-141P-201ENST00000410499 105 ntBASIC-1.92□□□□□ -2.72
HOXD4P09016 SNORD45C-201ENST00000383893 79 ntBASIC-1.93□□□□□ -2.72
HOXD4P09016 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
HOXD4P09016 RNU6-987P-201ENST00000384759 104 ntBASIC-1.94□□□□□ -2.72
HOXD4P09016 MIR656-201ENST00000385224 78 ntBASIC-1.94□□□□□ -2.72
HOXD4P09016 RNU4-37P-201ENST00000410214 84 ntBASIC-1.95□□□□□ -2.72
HOXD4P09016 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.96□□□□□ -2.72
HOXD4P09016 RNU6-230P-201ENST00000362457 104 ntBASIC-1.99□□□□□ -2.73
HOXD4P09016 RNY4P9-201ENST00000363194 97 ntBASIC-1.99□□□□□ -2.73
HOXD4P09016 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.99□□□□□ -2.73
HOXD4P09016 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.01□□□□□ -2.73
HOXD4P09016 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.03□□□□□ -2.73
HOXD4P09016 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.04□□□□□ -2.74
HOXD4P09016 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.05□□□□□ -2.74
HOXD4P09016 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.09□□□□□ -2.74
HOXD4P09016 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.09□□□□□ -2.74
HOXD4P09016 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.1□□□□□ -2.75
HOXD4P09016 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.11□□□□□ -2.75
HOXD4P09016 AL731768.1-201ENST00000603124 139 ntBASIC-2.11□□□□□ -2.75
HOXD4P09016 RNU6-803P-201ENST00000516034 102 ntBASIC-2.12□□□□□ -2.75
HOXD4P09016 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.13□□□□□ -2.75
HOXD4P09016 RNU6-854P-201ENST00000364036 107 ntBASIC-2.15□□□□□ -2.75
HOXD4P09016 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.19□□□□□ -2.76
HOXD4P09016 RNU6-737P-201ENST00000365370 107 ntBASIC-2.19□□□□□ -2.76
HOXD4P09016 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.22□□□□□ -2.76
HOXD4P09016 U6.103-201ENST00000637085 61 ntBASIC-2.22□□□□□ -2.76
HOXD4P09016 Y_RNA.406-201ENST00000383984 100 ntBASIC-2.29□□□□□ -2.78
HOXD4P09016 SNORD111B-201ENST00000408587 80 ntBASIC-2.29□□□□□ -2.78
HOXD4P09016 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.3□□□□□ -2.78
HOXD4P09016 MIR5693-201ENST00000577722 73 ntBASIC-2.3□□□□□ -2.78
HOXD4P09016 AL359920.1-201ENST00000618332 176 ntBASIC-2.31□□□□□ -2.78
HOXD4P09016 Y_RNA.511-201ENST00000384514 103 ntBASIC-2.32□□□□□ -2.78
HOXD4P09016 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.33□□□□□ -2.78
HOXD4P09016 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.33□□□□□ -2.78
HOXD4P09016 RNY4P25-201ENST00000459254 96 ntBASIC-2.33□□□□□ -2.78
HOXD4P09016 RNU6-422P-201ENST00000384632 107 ntBASIC-2.34□□□□□ -2.78
HOXD4P09016 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.36□□□□□ -2.79
HOXD4P09016 MIR124-1-201ENST00000385275 85 ntBASIC-2.37□□□□□ -2.79
HOXD4P09016 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 MIR509-1-201ENST00000385265 94 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 MIR509-2-201ENST00000390724 91 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 RNU6-1161P-201ENST00000516176 102 ntBASIC-2.38□□□□□ -2.79
HOXD4P09016 RNA5SP106-201ENST00000517274 100 ntBASIC-2.4□□□□□ -2.79
HOXD4P09016 RNU6-485P-201ENST00000363475 107 ntBASIC-2.41□□□□□ -2.8
HOXD4P09016 Y_RNA.652-201ENST00000458902 102 ntBASIC-2.41□□□□□ -2.8
HOXD4P09016 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.43□□□□□ -2.8
HOXD4P09016 RNU6-724P-201ENST00000390958 105 ntBASIC-2.44□□□□□ -2.8
HOXD4P09016 RNU6-1043P-201ENST00000410355 99 ntBASIC-2.44□□□□□ -2.8
HOXD4P09016 RNY4P10-201ENST00000365571 96 ntBASIC-2.45□□□□□ -2.8
HOXD4P09016 SNORD115-45-201ENST00000391078 81 ntBASIC-2.47□□□□□ -2.8
HOXD4P09016 Y_RNA.657-201ENST00000515983 102 ntBASIC-2.47□□□□□ -2.8
HOXD4P09016 MIR548AH-201ENST00000637109 76 ntBASIC-2.48□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 221.3 ms