Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR4263-201ENST00000584745 83 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 MIR6718-201ENST00000616153 80 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 SNORD114-12-201ENST00000365400 75 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 MIR204-201ENST00000385200 110 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 Y_RNA.603-201ENST00000410571 108 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.11□□□□□ -2.39
CCDC39Q9UFE4 RNA5SP257-201ENST00000363023 116 ntBASIC0.1□□□□□ -2.39
CCDC39Q9UFE4 MIR548N-201ENST00000408742 75 ntBASIC0.1□□□□□ -2.39
CCDC39Q9UFE4 AC013734.1-201ENST00000619329 111 ntBASIC0.09□□□□□ -2.4
CCDC39Q9UFE4 SNORA18.1-201ENST00000363418 128 ntBASIC0.08□□□□□ -2.4
CCDC39Q9UFE4 SNORA13-201ENST00000458790 133 ntBASIC0.08□□□□□ -2.4
CCDC39Q9UFE4 SNORD111B-201ENST00000408587 80 ntBASIC0.06□□□□□ -2.4
CCDC39Q9UFE4 MIR3666-201ENST00000607845 111 ntBASIC0.06□□□□□ -2.4
CCDC39Q9UFE4 MIR23C-201ENST00000579846 100 ntBASIC0.05□□□□□ -2.4
CCDC39Q9UFE4 SNORD114-11-201ENST00000363738 75 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR581-201ENST00000384895 96 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 AC090616.4-201ENST00000448026 115 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR5190-201ENST00000581537 80 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR4788-201ENST00000639104 80 ntBASIC0.04□□□□□ -2.4
CCDC39Q9UFE4 MIR4645-201ENST00000583158 77 ntBASIC0.03□□□□□ -2.4
CCDC39Q9UFE4 RNU6-894P-201ENST00000517094 105 ntBASIC0.02□□□□□ -2.41
CCDC39Q9UFE4 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
CCDC39Q9UFE4 MIR1295B-201ENST00000636144 60 ntBASIC0.02□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.223-201ENST00000364290 113 ntBASIC0.01□□□□□ -2.41
CCDC39Q9UFE4 RNA5SP26-201ENST00000362406 119 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 SNORA32.1-201ENST00000364514 115 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 RNU6-563P-201ENST00000364872 108 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 AC120024.2-201ENST00000576526 175 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 U6.97-201ENST00000636904 101 ntBASIC0□□□□□ -2.41
CCDC39Q9UFE4 RNU6-485P-201ENST00000363475 107 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 SNORD4A-201ENST00000459174 72 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.01□□□□□ -2.41
CCDC39Q9UFE4 SNORD114-16-201ENST00000363044 70 ntBASIC-0.02□□□□□ -2.41
CCDC39Q9UFE4 MIR371B-201ENST00000638082 66 ntBASIC-0.02□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 RNU6-133P-201ENST00000383989 107 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 RNU6-68P-201ENST00000516576 104 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.03□□□□□ -2.41
CCDC39Q9UFE4 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.04□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.05□□□□□ -2.42
CCDC39Q9UFE4 RNA5SP285-201ENST00000516619 119 ntBASIC-0.05□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.134-201ENST00000363435 105 ntBASIC-0.07□□□□□ -2.42
CCDC39Q9UFE4 SNORD115.2-201ENST00000391126 59 ntBASIC-0.07□□□□□ -2.42
CCDC39Q9UFE4 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC39Q9UFE4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.08□□□□□ -2.42
CCDC39Q9UFE4 AC021146.6-201ENST00000514659 117 ntBASIC-0.08□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.09□□□□□ -2.42
CCDC39Q9UFE4 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.1□□□□□ -2.43
CCDC39Q9UFE4 MIR6759-201ENST00000638110 65 ntBASIC-0.11□□□□□ -2.43
CCDC39Q9UFE4 MIR379-201ENST00000362218 67 ntBASIC-0.12□□□□□ -2.43
CCDC39Q9UFE4 SNORD18C-201ENST00000362704 69 ntBASIC-0.12□□□□□ -2.43
CCDC39Q9UFE4 RNU6-695P-201ENST00000391157 104 ntBASIC-0.12□□□□□ -2.43
CCDC39Q9UFE4 MIR147A-201ENST00000385079 72 ntBASIC-0.13□□□□□ -2.43
CCDC39Q9UFE4 RNA5SP67-201ENST00000516422 131 ntBASIC-0.13□□□□□ -2.43
CCDC39Q9UFE4 RNU6-431P-201ENST00000383874 107 ntBASIC-0.14□□□□□ -2.43
CCDC39Q9UFE4 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.15□□□□□ -2.43
CCDC39Q9UFE4 MIR4802-201ENST00000581881 80 ntBASIC-0.15□□□□□ -2.43
CCDC39Q9UFE4 AC018880.2-201ENST00000414265 201 ntBASIC-0.16□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.16□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.17□□□□□ -2.44
CCDC39Q9UFE4 SNORD64-201ENST00000386683 67 ntBASIC-0.17□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 SNORA3B-201ENST00000391305 131 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 MIR4636-201ENST00000582271 80 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 MIR6818-201ENST00000621576 65 ntBASIC-0.18□□□□□ -2.44
CCDC39Q9UFE4 RNU6-836P-201ENST00000362920 107 ntBASIC-0.19□□□□□ -2.44
CCDC39Q9UFE4 Z95118.1-201ENST00000421372 247 ntBASIC-0.19□□□□□ -2.44
CCDC39Q9UFE4 MIR5589-201ENST00000579442 60 ntBASIC-0.2□□□□□ -2.44
CCDC39Q9UFE4 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.21□□□□□ -2.44
CCDC39Q9UFE4 MIR214-201ENST00000385214 110 ntBASIC-0.21□□□□□ -2.44
CCDC39Q9UFE4 RNU6-79P-201ENST00000362511 107 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 SNORD114-31-201ENST00000363219 75 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 RNU6-912P-201ENST00000363800 104 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 RNA5SP224-201ENST00000365069 126 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 MIR4436A-201ENST00000585278 85 ntBASIC-0.22□□□□□ -2.44
CCDC39Q9UFE4 SNORD114-14-201ENST00000362723 75 ntBASIC-0.23□□□□□ -2.45
CCDC39Q9UFE4 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.23□□□□□ -2.45
CCDC39Q9UFE4 RNU6-164P-201ENST00000364604 103 ntBASIC-0.24□□□□□ -2.45
CCDC39Q9UFE4 Y_RNA.260-201ENST00000364628 101 ntBASIC-0.24□□□□□ -2.45
CCDC39Q9UFE4 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.24□□□□□ -2.45
CCDC39Q9UFE4 MIR196A2-201ENST00000385189 110 ntBASIC-0.25□□□□□ -2.45
CCDC39Q9UFE4 MIR382-201ENST00000637119 76 ntBASIC-0.25□□□□□ -2.45
CCDC39Q9UFE4 RNU6-1169P-201ENST00000363537 103 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 SNORD126-201ENST00000459475 77 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 IGLVI-20-201ENST00000519296 130 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 FTX_4.1-201ENST00000616291 147 ntBASIC-0.26□□□□□ -2.45
CCDC39Q9UFE4 SNORD14C-201ENST00000365382 88 ntBASIC-0.27□□□□□ -2.45
CCDC39Q9UFE4 RNU6-284P-201ENST00000411105 106 ntBASIC-0.27□□□□□ -2.45
CCDC39Q9UFE4 Y_RNA.519-201ENST00000384553 102 ntBASIC-0.28□□□□□ -2.45
CCDC39Q9UFE4 snoU83B.1-201ENST00000517136 88 ntBASIC-0.29□□□□□ -2.46
CCDC39Q9UFE4 AP001180.6-201ENST00000584918 159 ntBASIC-0.29□□□□□ -2.46
CCDC39Q9UFE4 SNORD114-25-201ENST00000363742 72 ntBASIC-0.3□□□□□ -2.46
CCDC39Q9UFE4 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-0.3□□□□□ -2.46
CCDC39Q9UFE4 RNU7-134P-201ENST00000458997 64 ntBASIC-0.31□□□□□ -2.46
CCDC39Q9UFE4 MIR4493-201ENST00000584016 73 ntBASIC-0.31□□□□□ -2.46
CCDC39Q9UFE4 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms