Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MIR936-201ENST00000401264 98 ntBASIC0.66□□□□□ -2.3
PCDHB3Q9Y5E6 MIR1273G-201ENST00000577677 100 ntBASIC0.64□□□□□ -2.31
PCDHB3Q9Y5E6 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
PCDHB3Q9Y5E6 RNU6-1326P-201ENST00000391262 107 ntBASIC0.63□□□□□ -2.31
PCDHB3Q9Y5E6 AC244250.2-201ENST00000418731 148 ntBASIC0.63□□□□□ -2.31
PCDHB3Q9Y5E6 AC010487.4-201ENST00000637027 61 ntBASIC0.63□□□□□ -2.31
PCDHB3Q9Y5E6 MIR4426-201ENST00000640330 63 ntBASIC0.63□□□□□ -2.31
PCDHB3Q9Y5E6 MIR5087-201ENST00000635826 76 ntBASIC0.62□□□□□ -2.31
PCDHB3Q9Y5E6 MIR4317-201ENST00000637586 65 ntBASIC0.62□□□□□ -2.31
PCDHB3Q9Y5E6 MIR892B-201ENST00000401279 77 ntBASIC0.61□□□□□ -2.31
PCDHB3Q9Y5E6 RNU6-1047P-201ENST00000364418 107 ntBASIC0.59□□□□□ -2.31
PCDHB3Q9Y5E6 Y_RNA.345-201ENST00000365384 92 ntBASIC0.59□□□□□ -2.31
PCDHB3Q9Y5E6 AP002795.1-201ENST00000534879 84 ntBASIC0.59□□□□□ -2.31
PCDHB3Q9Y5E6 MIR924-201ENST00000638017 53 ntBASIC0.58□□□□□ -2.32
PCDHB3Q9Y5E6 AC090625.1-201ENST00000357130 210 ntBASIC0.57□□□□□ -2.32
PCDHB3Q9Y5E6 MIR593-201ENST00000384856 100 ntBASIC0.57□□□□□ -2.32
PCDHB3Q9Y5E6 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
PCDHB3Q9Y5E6 RNA5SP169-201ENST00000517268 117 ntBASIC0.57□□□□□ -2.32
PCDHB3Q9Y5E6 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.56□□□□□ -2.32
PCDHB3Q9Y5E6 AL445193.1-201ENST00000441183 141 ntBASIC0.56□□□□□ -2.32
PCDHB3Q9Y5E6 MIR4711-201ENST00000578274 70 ntBASIC0.56□□□□□ -2.32
PCDHB3Q9Y5E6 MIR4280-201ENST00000582178 76 ntBASIC0.55□□□□□ -2.32
PCDHB3Q9Y5E6 MIR655-201ENST00000362159 97 ntBASIC0.54□□□□□ -2.32
PCDHB3Q9Y5E6 RNU6-361P-201ENST00000364454 107 ntBASIC0.54□□□□□ -2.32
PCDHB3Q9Y5E6 RNU6-1327P-201ENST00000365302 105 ntBASIC0.54□□□□□ -2.32
PCDHB3Q9Y5E6 MIR610-201ENST00000385139 96 ntBASIC0.54□□□□□ -2.32
PCDHB3Q9Y5E6 RNU7-165P-201ENST00000458864 60 ntBASIC0.53□□□□□ -2.32
PCDHB3Q9Y5E6 AC138207.3-201ENST00000585289 166 ntBASIC0.53□□□□□ -2.32
PCDHB3Q9Y5E6 MIR5683-201ENST00000636514 76 ntBASIC0.53□□□□□ -2.32
PCDHB3Q9Y5E6 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
PCDHB3Q9Y5E6 RNA5SP193-201ENST00000410353 107 ntBASIC0.52□□□□□ -2.33
PCDHB3Q9Y5E6 MIR4743-201ENST00000584576 69 ntBASIC0.52□□□□□ -2.33
PCDHB3Q9Y5E6 MIR4315-1-201ENST00000636800 73 ntBASIC0.52□□□□□ -2.33
PCDHB3Q9Y5E6 MIR4315-2-201ENST00000640925 73 ntBASIC0.52□□□□□ -2.33
PCDHB3Q9Y5E6 MIR202-201ENST00000362219 110 ntBASIC0.51□□□□□ -2.33
PCDHB3Q9Y5E6 RNA5SP457-201ENST00000363657 124 ntBASIC0.51□□□□□ -2.33
PCDHB3Q9Y5E6 Y_RNA.206-201ENST00000364136 102 ntBASIC0.51□□□□□ -2.33
PCDHB3Q9Y5E6 RNU6-608P-201ENST00000383927 104 ntBASIC0.51□□□□□ -2.33
PCDHB3Q9Y5E6 RNY3P8-201ENST00000411366 126 ntBASIC0.51□□□□□ -2.33
PCDHB3Q9Y5E6 RNA5SP499-201ENST00000363982 119 ntBASIC0.5□□□□□ -2.33
PCDHB3Q9Y5E6 SNORA26.4-201ENST00000391188 123 ntBASIC0.5□□□□□ -2.33
PCDHB3Q9Y5E6 AC114737.2-201ENST00000421583 173 ntBASIC0.5□□□□□ -2.33
PCDHB3Q9Y5E6 RNU7-159P-201ENST00000459284 62 ntBASIC0.5□□□□□ -2.33
PCDHB3Q9Y5E6 MIR145-201ENST00000384967 88 ntBASIC0.49□□□□□ -2.33
PCDHB3Q9Y5E6 AL353691.2-201ENST00000443795 59 ntBASIC0.49□□□□□ -2.33
PCDHB3Q9Y5E6 SNORD18.2-201ENST00000459604 70 ntBASIC0.49□□□□□ -2.33
PCDHB3Q9Y5E6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.49□□□□□ -2.33
PCDHB3Q9Y5E6 Y_RNA.115-201ENST00000363272 98 ntBASIC0.48□□□□□ -2.33
PCDHB3Q9Y5E6 RNU6-300P-201ENST00000459080 104 ntBASIC0.48□□□□□ -2.33
PCDHB3Q9Y5E6 SNORD38.3-201ENST00000516599 73 ntBASIC0.48□□□□□ -2.33
PCDHB3Q9Y5E6 RNY1P9-201ENST00000532431 109 ntBASIC0.48□□□□□ -2.33
PCDHB3Q9Y5E6 MIR8087-201ENST00000612745 78 ntBASIC0.48□□□□□ -2.33
PCDHB3Q9Y5E6 MIR6851-201ENST00000617060 67 ntBASIC0.48□□□□□ -2.33
PCDHB3Q9Y5E6 SNORA50A-201ENST00000384225 134 ntBASIC0.47□□□□□ -2.33
PCDHB3Q9Y5E6 MIR330-201ENST00000362196 94 ntBASIC0.46□□□□□ -2.34
PCDHB3Q9Y5E6 SNORA17.4-201ENST00000391287 132 ntBASIC0.45□□□□□ -2.34
PCDHB3Q9Y5E6 RNA5SP330-201ENST00000517096 96 ntBASIC0.45□□□□□ -2.34
PCDHB3Q9Y5E6 SNORD115-33-201ENST00000363723 82 ntBASIC0.44□□□□□ -2.34
PCDHB3Q9Y5E6 Y_RNA.374-201ENST00000365606 101 ntBASIC0.44□□□□□ -2.34
PCDHB3Q9Y5E6 VTRNA1-3-201ENST00000365645 89 ntBASIC0.44□□□□□ -2.34
PCDHB3Q9Y5E6 SNORD74.6-201ENST00000364796 70 ntBASIC0.43□□□□□ -2.34
PCDHB3Q9Y5E6 RNA5SP214-201ENST00000363378 118 ntBASIC0.42□□□□□ -2.34
PCDHB3Q9Y5E6 Y_RNA.30-201ENST00000362572 97 ntBASIC0.41□□□□□ -2.34
PCDHB3Q9Y5E6 SNORA62.5-201ENST00000516634 120 ntBASIC0.41□□□□□ -2.34
PCDHB3Q9Y5E6 SNORD49B-201ENST00000365172 72 ntBASIC0.4□□□□□ -2.35
PCDHB3Q9Y5E6 SNORD114-5-201ENST00000362928 70 ntBASIC0.39□□□□□ -2.35
PCDHB3Q9Y5E6 MIR1197-201ENST00000408818 88 ntBASIC0.39□□□□□ -2.35
PCDHB3Q9Y5E6 RNU6-176P-201ENST00000517196 105 ntBASIC0.39□□□□□ -2.35
PCDHB3Q9Y5E6 RNU6-46P-201ENST00000383860 107 ntBASIC0.38□□□□□ -2.35
PCDHB3Q9Y5E6 RNA5SP134-201ENST00000516492 96 ntBASIC0.38□□□□□ -2.35
PCDHB3Q9Y5E6 SNORD22.1-201ENST00000516331 125 ntBASIC0.37□□□□□ -2.35
PCDHB3Q9Y5E6 SNORD114-9-201ENST00000364370 72 ntBASIC0.36□□□□□ -2.35
PCDHB3Q9Y5E6 MIR518B-201ENST00000385127 83 ntBASIC0.36□□□□□ -2.35
PCDHB3Q9Y5E6 RNU6-929P-201ENST00000384429 107 ntBASIC0.35□□□□□ -2.35
PCDHB3Q9Y5E6 RNA5SP66-201ENST00000517178 101 ntBASIC0.35□□□□□ -2.35
PCDHB3Q9Y5E6 MIR4514-201ENST00000581410 57 ntBASIC0.34□□□□□ -2.36
PCDHB3Q9Y5E6 RNA5SP257-201ENST00000363023 116 ntBASIC0.33□□□□□ -2.36
PCDHB3Q9Y5E6 SNORD60-201ENST00000383903 83 ntBASIC0.33□□□□□ -2.36
PCDHB3Q9Y5E6 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
PCDHB3Q9Y5E6 RNU6-894P-201ENST00000517094 105 ntBASIC0.33□□□□□ -2.36
PCDHB3Q9Y5E6 SNORD114-17-201ENST00000364699 75 ntBASIC0.32□□□□□ -2.36
PCDHB3Q9Y5E6 SNORD75.1-201ENST00000408373 60 ntBASIC0.32□□□□□ -2.36
PCDHB3Q9Y5E6 RPL35AP4-201ENST00000412007 102 ntBASIC0.32□□□□□ -2.36
PCDHB3Q9Y5E6 AL590491.3-201ENST00000610731 82 ntBASIC0.32□□□□□ -2.36
PCDHB3Q9Y5E6 AC093726.3-201ENST00000637588 150 ntBASIC0.31□□□□□ -2.36
PCDHB3Q9Y5E6 SNORD111B-201ENST00000408587 80 ntBASIC0.3□□□□□ -2.36
PCDHB3Q9Y5E6 RNA5SP63-201ENST00000391225 112 ntBASIC0.29□□□□□ -2.36
PCDHB3Q9Y5E6 AC023932.2-201ENST00000603176 175 ntBASIC0.29□□□□□ -2.36
PCDHB3Q9Y5E6 MIR548N-201ENST00000408742 75 ntBASIC0.28□□□□□ -2.36
PCDHB3Q9Y5E6 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.28□□□□□ -2.36
PCDHB3Q9Y5E6 Y_RNA.68-201ENST00000362881 102 ntBASIC0.26□□□□□ -2.37
PCDHB3Q9Y5E6 MIR507-201ENST00000385234 94 ntBASIC0.26□□□□□ -2.37
PCDHB3Q9Y5E6 AP000533.3-201ENST00000447704 118 ntBASIC0.26□□□□□ -2.37
PCDHB3Q9Y5E6 Y_RNA.603-201ENST00000410571 108 ntBASIC0.24□□□□□ -2.37
PCDHB3Q9Y5E6 MIR3179-1-201ENST00000578940 84 ntBASIC0.24□□□□□ -2.37
PCDHB3Q9Y5E6 MIR3179-2-201ENST00000579107 84 ntBASIC0.24□□□□□ -2.37
PCDHB3Q9Y5E6 MIR3179-3-201ENST00000579566 84 ntBASIC0.24□□□□□ -2.37
PCDHB3Q9Y5E6 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
PCDHB3Q9Y5E6 MIR3179-4-201ENST00000617599 84 ntBASIC0.24□□□□□ -2.37
PCDHB3Q9Y5E6 Y_RNA.189-201ENST00000363959 112 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms