Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MIR892B-201ENST00000401279 77 ntBASIC0.43□□□□□ -2.34
CCDC39Q9UFE4 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 RNU6-1233P-201ENST00000362922 102 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 AC244250.2-201ENST00000418731 148 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 U6.103-201ENST00000637085 61 ntBASIC0.42□□□□□ -2.34
CCDC39Q9UFE4 SNORD114-23-201ENST00000363536 72 ntBASIC0.41□□□□□ -2.34
CCDC39Q9UFE4 MIR593-201ENST00000384856 100 ntBASIC0.41□□□□□ -2.34
CCDC39Q9UFE4 Y_RNA.699-201ENST00000516803 93 ntBASIC0.41□□□□□ -2.34
CCDC39Q9UFE4 SNORA27.2-201ENST00000363365 126 ntBASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 RNU6-59P-201ENST00000384787 107 ntBASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.4□□□□□ -2.35
CCDC39Q9UFE4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 MIR193B-201ENST00000384907 83 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 RNA5SP193-201ENST00000410353 107 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 MIR4711-201ENST00000578274 70 ntBASIC0.39□□□□□ -2.35
CCDC39Q9UFE4 MIR610-201ENST00000385139 96 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 RNA5SP134-201ENST00000516492 96 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR4280-201ENST00000582178 76 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR4315-1-201ENST00000636800 73 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR4315-2-201ENST00000640925 73 ntBASIC0.38□□□□□ -2.35
CCDC39Q9UFE4 MIR655-201ENST00000362159 97 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 AL445193.1-201ENST00000441183 141 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 RNU7-165P-201ENST00000458864 60 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 AP002795.1-201ENST00000534879 84 ntBASIC0.37□□□□□ -2.35
CCDC39Q9UFE4 MIR4743-201ENST00000584576 69 ntBASIC0.36□□□□□ -2.35
CCDC39Q9UFE4 MIR145-201ENST00000384967 88 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 MIR1273G-201ENST00000577677 100 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 AC010487.4-201ENST00000637027 61 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 MIR4426-201ENST00000640330 63 ntBASIC0.35□□□□□ -2.35
CCDC39Q9UFE4 RNU7-159P-201ENST00000459284 62 ntBASIC0.34□□□□□ -2.36
CCDC39Q9UFE4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.33□□□□□ -2.36
CCDC39Q9UFE4 RNU6-1326P-201ENST00000391262 107 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 SNORD38.3-201ENST00000516599 73 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 RNA5SP169-201ENST00000517268 117 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 MIR5683-201ENST00000636514 76 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 MIR4317-201ENST00000637586 65 ntBASIC0.32□□□□□ -2.36
CCDC39Q9UFE4 RNA5SP214-201ENST00000363378 118 ntBASIC0.31□□□□□ -2.36
CCDC39Q9UFE4 MIR6851-201ENST00000617060 67 ntBASIC0.31□□□□□ -2.36
CCDC39Q9UFE4 RNU6-1047P-201ENST00000364418 107 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 RNU6-608P-201ENST00000383927 104 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 SNORA26.4-201ENST00000391188 123 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 SNORD18.2-201ENST00000459604 70 ntBASIC0.3□□□□□ -2.36
CCDC39Q9UFE4 RNU6-361P-201ENST00000364454 107 ntBASIC0.29□□□□□ -2.36
CCDC39Q9UFE4 Y_RNA.345-201ENST00000365384 92 ntBASIC0.29□□□□□ -2.36
CCDC39Q9UFE4 MIR202-201ENST00000362219 110 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 RNY3P8-201ENST00000411366 126 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 AL353691.2-201ENST00000443795 59 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 MIR5093-201ENST00000583199 100 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 MIR924-201ENST00000638017 53 ntBASIC0.28□□□□□ -2.36
CCDC39Q9UFE4 SNORD114-5-201ENST00000362928 70 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD114-9-201ENST00000364370 72 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD74.6-201ENST00000364796 70 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD49B-201ENST00000365172 72 ntBASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.27□□□□□ -2.37
CCDC39Q9UFE4 SNORD115-33-201ENST00000363723 82 ntBASIC0.26□□□□□ -2.37
CCDC39Q9UFE4 MIR8087-201ENST00000612745 78 ntBASIC0.26□□□□□ -2.37
CCDC39Q9UFE4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 RNU6-46P-201ENST00000383860 107 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 RNU6-929P-201ENST00000384429 107 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 RNA5SP330-201ENST00000517096 96 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 MIR4514-201ENST00000581410 57 ntBASIC0.25□□□□□ -2.37
CCDC39Q9UFE4 MIR1197-201ENST00000408818 88 ntBASIC0.24□□□□□ -2.37
CCDC39Q9UFE4 RNU6-300P-201ENST00000459080 104 ntBASIC0.24□□□□□ -2.37
CCDC39Q9UFE4 Y_RNA.206-201ENST00000364136 102 ntBASIC0.23□□□□□ -2.37
CCDC39Q9UFE4 SNORA17.4-201ENST00000391287 132 ntBASIC0.23□□□□□ -2.37
CCDC39Q9UFE4 SNORD22.1-201ENST00000516331 125 ntBASIC0.23□□□□□ -2.37
CCDC39Q9UFE4 MIR330-201ENST00000362196 94 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 MIR518B-201ENST00000385127 83 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 RNA5SP66-201ENST00000517178 101 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 RNY1P9-201ENST00000532431 109 ntBASIC0.22□□□□□ -2.37
CCDC39Q9UFE4 Y_RNA.30-201ENST00000362572 97 ntBASIC0.21□□□□□ -2.38
CCDC39Q9UFE4 SNORA62.5-201ENST00000516634 120 ntBASIC0.21□□□□□ -2.38
CCDC39Q9UFE4 AL590491.3-201ENST00000610731 82 ntBASIC0.21□□□□□ -2.38
CCDC39Q9UFE4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
CCDC39Q9UFE4 AC138207.3-201ENST00000585289 166 ntBASIC0.2□□□□□ -2.38
CCDC39Q9UFE4 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
CCDC39Q9UFE4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
CCDC39Q9UFE4 AC093726.3-201ENST00000637588 150 ntBASIC0.19□□□□□ -2.38
CCDC39Q9UFE4 SNORD114-17-201ENST00000364699 75 ntBASIC0.18□□□□□ -2.38
CCDC39Q9UFE4 MIR1295A-201ENST00000408463 79 ntBASIC0.18□□□□□ -2.38
CCDC39Q9UFE4 RNA5SP457-201ENST00000363657 124 ntBASIC0.17□□□□□ -2.38
CCDC39Q9UFE4 SNORD75.1-201ENST00000408373 60 ntBASIC0.17□□□□□ -2.38
CCDC39Q9UFE4 RNU6-176P-201ENST00000517196 105 ntBASIC0.17□□□□□ -2.38
CCDC39Q9UFE4 SNORD60-201ENST00000383903 83 ntBASIC0.16□□□□□ -2.38
CCDC39Q9UFE4 RPL35AP4-201ENST00000412007 102 ntBASIC0.16□□□□□ -2.38
CCDC39Q9UFE4 AP000533.3-201ENST00000447704 118 ntBASIC0.15□□□□□ -2.39
CCDC39Q9UFE4 AC023932.2-201ENST00000603176 175 ntBASIC0.15□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-1-201ENST00000578940 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-2-201ENST00000579107 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-3-201ENST00000579566 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR3179-4-201ENST00000617599 84 ntBASIC0.14□□□□□ -2.39
CCDC39Q9UFE4 MIR507-201ENST00000385234 94 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 AC104692.1-201ENST00000472406 90 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 MIR2909-201ENST00000617113 69 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.13□□□□□ -2.39
CCDC39Q9UFE4 Y_RNA.189-201ENST00000363959 112 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 Y_RNA.374-201ENST00000365606 101 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 RNA5SP63-201ENST00000391225 112 ntBASIC0.12□□□□□ -2.39
CCDC39Q9UFE4 MIR4290-201ENST00000583807 95 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms