Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNU6-176P-201ENST00000517196 105 ntBASIC0.83□□□□□ -2.28
NPAS3Q8IXF0 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
NPAS3Q8IXF0 RNU6-127P-201ENST00000390897 107 ntBASIC0.82□□□□□ -2.28
NPAS3Q8IXF0 SNORD44.1-201ENST00000363202 61 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 RNA5SP457-201ENST00000363657 124 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 SNORD60-201ENST00000383903 83 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 SNORD56B-201ENST00000384713 71 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 RPL35AP4-201ENST00000412007 102 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 AC114755.3-201ENST00000481111 251 ntBASIC0.81□□□□□ -2.28
NPAS3Q8IXF0 RNA5SP476-201ENST00000516613 103 ntBASIC0.8□□□□□ -2.28
NPAS3Q8IXF0 MIR508-201ENST00000384857 115 ntBASIC0.79□□□□□ -2.28
NPAS3Q8IXF0 RNA5SP163-201ENST00000410304 99 ntBASIC0.79□□□□□ -2.28
NPAS3Q8IXF0 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
NPAS3Q8IXF0 MIR6513-201ENST00000621188 64 ntBASIC0.79□□□□□ -2.28
NPAS3Q8IXF0 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
NPAS3Q8IXF0 MIR103A1-201ENST00000362165 78 ntBASIC0.78□□□□□ -2.28
NPAS3Q8IXF0 RNA5SP62-201ENST00000363457 110 ntBASIC0.78□□□□□ -2.28
NPAS3Q8IXF0 SNORD18.2-201ENST00000459604 70 ntBASIC0.78□□□□□ -2.28
NPAS3Q8IXF0 PSMC1P5-201ENST00000512850 177 ntBASIC0.78□□□□□ -2.28
NPAS3Q8IXF0 RNA5SP67-201ENST00000516422 131 ntBASIC0.78□□□□□ -2.28
NPAS3Q8IXF0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.77□□□□□ -2.29
NPAS3Q8IXF0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
NPAS3Q8IXF0 Y_RNA.433-201ENST00000384089 102 ntBASIC0.76□□□□□ -2.29
NPAS3Q8IXF0 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
NPAS3Q8IXF0 MIR936-201ENST00000401264 98 ntBASIC0.76□□□□□ -2.29
NPAS3Q8IXF0 AL353691.2-201ENST00000443795 59 ntBASIC0.76□□□□□ -2.29
NPAS3Q8IXF0 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
NPAS3Q8IXF0 RNA5SP257-201ENST00000363023 116 ntBASIC0.75□□□□□ -2.29
NPAS3Q8IXF0 Y_RNA.320-201ENST00000365144 102 ntBASIC0.75□□□□□ -2.29
NPAS3Q8IXF0 RNU6-110P-201ENST00000384508 104 ntBASIC0.75□□□□□ -2.29
NPAS3Q8IXF0 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.75□□□□□ -2.29
NPAS3Q8IXF0 SNORD114-23-201ENST00000363536 72 ntBASIC0.74□□□□□ -2.29
NPAS3Q8IXF0 RNU6-815P-201ENST00000384080 113 ntBASIC0.74□□□□□ -2.29
NPAS3Q8IXF0 AC013734.1-201ENST00000619329 111 ntBASIC0.74□□□□□ -2.29
NPAS3Q8IXF0 U6.97-201ENST00000636904 101 ntBASIC0.74□□□□□ -2.29
NPAS3Q8IXF0 RNU6-1091P-201ENST00000363945 107 ntBASIC0.73□□□□□ -2.29
NPAS3Q8IXF0 SNORA26.4-201ENST00000391188 123 ntBASIC0.73□□□□□ -2.29
NPAS3Q8IXF0 RNU6-863P-201ENST00000515989 104 ntBASIC0.73□□□□□ -2.29
NPAS3Q8IXF0 CR383656.4-201ENST00000546909 122 ntBASIC0.73□□□□□ -2.29
NPAS3Q8IXF0 MIR924-201ENST00000638017 53 ntBASIC0.73□□□□□ -2.29
NPAS3Q8IXF0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
NPAS3Q8IXF0 MIR548N-201ENST00000408742 75 ntBASIC0.72□□□□□ -2.29
NPAS3Q8IXF0 Y_RNA.519-201ENST00000384553 102 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 MIR1197-201ENST00000408818 88 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 RNA5SP193-201ENST00000410353 107 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 SNORA68.3-201ENST00000515906 83 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 RNA5SP121-201ENST00000516537 101 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 SNORD38.3-201ENST00000516599 73 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 MIR8087-201ENST00000612745 78 ntBASIC0.71□□□□□ -2.3
NPAS3Q8IXF0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.7□□□□□ -2.3
NPAS3Q8IXF0 MIR4653-201ENST00000585107 83 ntBASIC0.7□□□□□ -2.3
NPAS3Q8IXF0 MIR581-201ENST00000384895 96 ntBASIC0.69□□□□□ -2.3
NPAS3Q8IXF0 MIR507-201ENST00000385234 94 ntBASIC0.69□□□□□ -2.3
NPAS3Q8IXF0 HAR1A.1-201ENST00000459583 118 ntBASIC0.69□□□□□ -2.3
NPAS3Q8IXF0 AC010487.4-201ENST00000637027 61 ntBASIC0.69□□□□□ -2.3
NPAS3Q8IXF0 Y_RNA.223-201ENST00000364290 113 ntBASIC0.68□□□□□ -2.3
NPAS3Q8IXF0 Y_RNA.603-201ENST00000410571 108 ntBASIC0.68□□□□□ -2.3
NPAS3Q8IXF0 AC244250.2-201ENST00000418731 148 ntBASIC0.68□□□□□ -2.3
NPAS3Q8IXF0 MIR4711-201ENST00000578274 70 ntBASIC0.68□□□□□ -2.3
NPAS3Q8IXF0 RNA5SP347-201ENST00000362445 119 ntBASIC0.67□□□□□ -2.3
NPAS3Q8IXF0 MIR4280-201ENST00000582178 76 ntBASIC0.67□□□□□ -2.3
NPAS3Q8IXF0 RNU6-180P-201ENST00000516697 61 ntBASIC0.66□□□□□ -2.3
NPAS3Q8IXF0 MIR2909-201ENST00000617113 69 ntBASIC0.66□□□□□ -2.3
NPAS3Q8IXF0 SNORD115-33-201ENST00000363723 82 ntBASIC0.65□□□□□ -2.31
NPAS3Q8IXF0 MIR593-201ENST00000384856 100 ntBASIC0.65□□□□□ -2.31
NPAS3Q8IXF0 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
NPAS3Q8IXF0 MIR548H2-201ENST00000408874 88 ntBASIC0.65□□□□□ -2.31
NPAS3Q8IXF0 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC0.65□□□□□ -2.31
NPAS3Q8IXF0 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC0.65□□□□□ -2.31
NPAS3Q8IXF0 RNA5SP499-201ENST00000363982 119 ntBASIC0.64□□□□□ -2.31
NPAS3Q8IXF0 RNU6-68P-201ENST00000516576 104 ntBASIC0.64□□□□□ -2.31
NPAS3Q8IXF0 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.64□□□□□ -2.31
NPAS3Q8IXF0 MIR330-201ENST00000362196 94 ntBASIC0.63□□□□□ -2.31
NPAS3Q8IXF0 MIR148A-201ENST00000362215 68 ntBASIC0.63□□□□□ -2.31
NPAS3Q8IXF0 RNU6-836P-201ENST00000362920 107 ntBASIC0.63□□□□□ -2.31
NPAS3Q8IXF0 SNORD114-17-201ENST00000364699 75 ntBASIC0.63□□□□□ -2.31
NPAS3Q8IXF0 MIR892B-201ENST00000401279 77 ntBASIC0.62□□□□□ -2.31
NPAS3Q8IXF0 RNU6-563P-201ENST00000364872 108 ntBASIC0.61□□□□□ -2.31
NPAS3Q8IXF0 MIRLET7D-201ENST00000362263 87 ntBASIC0.6□□□□□ -2.31
NPAS3Q8IXF0 MIR548T-201ENST00000408369 74 ntBASIC0.6□□□□□ -2.31
NPAS3Q8IXF0 SNORD22.1-201ENST00000516331 125 ntBASIC0.6□□□□□ -2.31
NPAS3Q8IXF0 AC069113.3-201ENST00000521019 150 ntBASIC0.59□□□□□ -2.31
NPAS3Q8IXF0 Y_RNA.129-201ENST00000363392 110 ntBASIC0.58□□□□□ -2.32
NPAS3Q8IXF0 AC120024.2-201ENST00000576526 175 ntBASIC0.58□□□□□ -2.32
NPAS3Q8IXF0 MIR6851-201ENST00000617060 67 ntBASIC0.58□□□□□ -2.32
NPAS3Q8IXF0 AC090625.1-201ENST00000357130 210 ntBASIC0.56□□□□□ -2.32
NPAS3Q8IXF0 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
NPAS3Q8IXF0 MIR655-201ENST00000362159 97 ntBASIC0.55□□□□□ -2.32
NPAS3Q8IXF0 Y_RNA.260-201ENST00000364628 101 ntBASIC0.55□□□□□ -2.32
NPAS3Q8IXF0 MIR6086-201ENST00000638065 55 ntBASIC0.55□□□□□ -2.32
NPAS3Q8IXF0 RNU6-1169P-201ENST00000363537 103 ntBASIC0.54□□□□□ -2.32
NPAS3Q8IXF0 RNU6-695P-201ENST00000391157 104 ntBASIC0.54□□□□□ -2.32
NPAS3Q8IXF0 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
NPAS3Q8IXF0 SNORD74.6-201ENST00000364796 70 ntBASIC0.53□□□□□ -2.32
NPAS3Q8IXF0 MIR610-201ENST00000385139 96 ntBASIC0.53□□□□□ -2.32
NPAS3Q8IXF0 MIR548AJ2-201ENST00000408539 92 ntBASIC0.53□□□□□ -2.32
NPAS3Q8IXF0 AP000533.3-201ENST00000447704 118 ntBASIC0.53□□□□□ -2.32
NPAS3Q8IXF0 AC090616.4-201ENST00000448026 115 ntBASIC0.53□□□□□ -2.32
NPAS3Q8IXF0 MIR518B-201ENST00000385127 83 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 247.1 ms