Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC091912.2-201ENST00000624798 167 ntBASIC-1.41□□□□□ -2.64
NPHP1O15259 MIR1245B-201ENST00000636115 69 ntBASIC-1.41□□□□□ -2.64
NPHP1O15259 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.42□□□□□ -2.64
NPHP1O15259 MIR4712-201ENST00000583750 82 ntBASIC-1.42□□□□□ -2.64
NPHP1O15259 U4.4-201ENST00000620626 117 ntBASIC-1.42□□□□□ -2.64
NPHP1O15259 RNA5SP215-201ENST00000363440 122 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 RNU6-668P-201ENST00000364180 107 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 RNU6-10P-201ENST00000384036 107 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 MIR450A2-201ENST00000385022 100 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 MIR3115-201ENST00000577915 68 ntBASIC-1.43□□□□□ -2.64
NPHP1O15259 MIR494-201ENST00000349529 81 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 RNU6-164P-201ENST00000364604 103 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 RNU6-294P-201ENST00000364999 102 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 SNORD45A-201ENST00000384512 84 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 MIR548V-201ENST00000584165 80 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 MIR6874-201ENST00000635894 71 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 MIR4320-201ENST00000636981 65 ntBASIC-1.44□□□□□ -2.64
NPHP1O15259 RNA5SP192-201ENST00000364404 120 ntBASIC-1.45□□□□□ -2.64
NPHP1O15259 RNU6-242P-201ENST00000384359 107 ntBASIC-1.45□□□□□ -2.64
NPHP1O15259 MIR5683-201ENST00000636514 76 ntBASIC-1.45□□□□□ -2.64
NPHP1O15259 MIR429-201ENST00000362106 83 ntBASIC-1.46□□□□□ -2.64
NPHP1O15259 MIR6502-201ENST00000617296 76 ntBASIC-1.46□□□□□ -2.64
NPHP1O15259 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.47□□□□□ -2.64
NPHP1O15259 RPL35AP4-201ENST00000412007 102 ntBASIC-1.47□□□□□ -2.64
NPHP1O15259 MIR3165-201ENST00000579874 75 ntBASIC-1.47□□□□□ -2.64
NPHP1O15259 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.47□□□□□ -2.64
NPHP1O15259 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.48□□□□□ -2.65
NPHP1O15259 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.48□□□□□ -2.65
NPHP1O15259 AC090616.4-201ENST00000448026 115 ntBASIC-1.48□□□□□ -2.65
NPHP1O15259 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.49□□□□□ -2.65
NPHP1O15259 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.49□□□□□ -2.65
NPHP1O15259 MIR630-201ENST00000384957 97 ntBASIC-1.49□□□□□ -2.65
NPHP1O15259 RNU6-696P-201ENST00000390834 107 ntBASIC-1.49□□□□□ -2.65
NPHP1O15259 MIR4666B-201ENST00000578142 81 ntBASIC-1.49□□□□□ -2.65
NPHP1O15259 MIR5582-201ENST00000579697 68 ntBASIC-1.49□□□□□ -2.65
NPHP1O15259 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.5□□□□□ -2.65
NPHP1O15259 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.5□□□□□ -2.65
NPHP1O15259 RNU6-70P-201ENST00000516438 60 ntBASIC-1.5□□□□□ -2.65
NPHP1O15259 MIR4520-1-201ENST00000582609 70 ntBASIC-1.5□□□□□ -2.65
NPHP1O15259 MIR4490-201ENST00000582647 84 ntBASIC-1.5□□□□□ -2.65
NPHP1O15259 MIR198-201ENST00000637333 62 ntBASIC-1.5□□□□□ -2.65
NPHP1O15259 HLA-S-202ENST00000425174 53 ntBASIC-1.51□□□□□ -2.65
NPHP1O15259 MIR5591-201ENST00000578248 65 ntBASIC-1.51□□□□□ -2.65
NPHP1O15259 SNORD113-2-201ENST00000391082 72 ntBASIC-1.52□□□□□ -2.65
NPHP1O15259 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.52□□□□□ -2.65
NPHP1O15259 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.54□□□□□ -2.66
NPHP1O15259 RNU6-820P-201ENST00000384273 107 ntBASIC-1.54□□□□□ -2.66
NPHP1O15259 MIR154-201ENST00000385243 84 ntBASIC-1.54□□□□□ -2.66
NPHP1O15259 MIR601-201ENST00000385256 79 ntBASIC-1.54□□□□□ -2.66
NPHP1O15259 MIR548Q-201ENST00000408404 100 ntBASIC-1.54□□□□□ -2.66
NPHP1O15259 MIR4770-201ENST00000579149 58 ntBASIC-1.54□□□□□ -2.66
NPHP1O15259 RNU6-598P-201ENST00000364017 105 ntBASIC-1.55□□□□□ -2.66
NPHP1O15259 RNA5SP173-201ENST00000364857 136 ntBASIC-1.55□□□□□ -2.66
NPHP1O15259 MIR4723-201ENST00000585070 81 ntBASIC-1.56□□□□□ -2.66
NPHP1O15259 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.56□□□□□ -2.66
NPHP1O15259 RNU6-787P-201ENST00000384032 107 ntBASIC-1.57□□□□□ -2.66
NPHP1O15259 RNU6-895P-201ENST00000384125 103 ntBASIC-1.58□□□□□ -2.66
NPHP1O15259 SNORD116-24-201ENST00000384549 92 ntBASIC-1.58□□□□□ -2.66
NPHP1O15259 MIR3134-201ENST00000579433 74 ntBASIC-1.58□□□□□ -2.66
NPHP1O15259 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.59□□□□□ -2.66
NPHP1O15259 SNORD116-16-201ENST00000384533 92 ntBASIC-1.59□□□□□ -2.66
NPHP1O15259 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.59□□□□□ -2.66
NPHP1O15259 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.6□□□□□ -2.67
NPHP1O15259 AC062037.1-201ENST00000605302 128 ntBASIC-1.6□□□□□ -2.67
NPHP1O15259 SNORD115-31-201ENST00000365318 82 ntBASIC-1.61□□□□□ -2.67
NPHP1O15259 RNU6-608P-201ENST00000383927 104 ntBASIC-1.61□□□□□ -2.67
NPHP1O15259 MIR520D-201ENST00000385002 87 ntBASIC-1.61□□□□□ -2.67
NPHP1O15259 RNU6-226P-201ENST00000363778 107 ntBASIC-1.62□□□□□ -2.67
NPHP1O15259 RNA5SP86-201ENST00000390869 98 ntBASIC-1.62□□□□□ -2.67
NPHP1O15259 AC018880.2-201ENST00000414265 201 ntBASIC-1.62□□□□□ -2.67
NPHP1O15259 RNU6-687P-201ENST00000516443 89 ntBASIC-1.62□□□□□ -2.67
NPHP1O15259 RNU6-79P-201ENST00000362511 107 ntBASIC-1.63□□□□□ -2.67
NPHP1O15259 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.63□□□□□ -2.67
NPHP1O15259 SNORA41B-201ENST00000384785 128 ntBASIC-1.63□□□□□ -2.67
NPHP1O15259 RNU6-630P-201ENST00000391258 106 ntBASIC-1.63□□□□□ -2.67
NPHP1O15259 U2.18-201ENST00000622185 84 ntBASIC-1.63□□□□□ -2.67
NPHP1O15259 RNU6-400P-201ENST00000391173 106 ntBASIC-1.65□□□□□ -2.67
NPHP1O15259 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.66□□□□□ -2.68
NPHP1O15259 RNU6-411P-201ENST00000384451 107 ntBASIC-1.67□□□□□ -2.68
NPHP1O15259 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.69□□□□□ -2.68
NPHP1O15259 MIR548AA1-201ENST00000384971 97 ntBASIC-1.69□□□□□ -2.68
NPHP1O15259 MIR548H1-201ENST00000408610 102 ntBASIC-1.69□□□□□ -2.68
NPHP1O15259 RNA5SP170-201ENST00000517150 101 ntBASIC-1.69□□□□□ -2.68
NPHP1O15259 U7.4-201ENST00000614961 63 ntBASIC-1.69□□□□□ -2.68
NPHP1O15259 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.7□□□□□ -2.68
NPHP1O15259 SNORD1B-201ENST00000363091 84 ntBASIC-1.71□□□□□ -2.68
NPHP1O15259 MIR487B-201ENST00000385021 84 ntBASIC-1.71□□□□□ -2.68
NPHP1O15259 RNU6-542P-201ENST00000516405 103 ntBASIC-1.71□□□□□ -2.68
NPHP1O15259 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.72□□□□□ -2.68
NPHP1O15259 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.72□□□□□ -2.68
NPHP1O15259 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.73□□□□□ -2.69
NPHP1O15259 MIR3170-201ENST00000582699 77 ntBASIC-1.74□□□□□ -2.69
NPHP1O15259 U4.2-201ENST00000618561 85 ntBASIC-1.74□□□□□ -2.69
NPHP1O15259 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.75□□□□□ -2.69
NPHP1O15259 SNORD73B-201ENST00000364394 72 ntBASIC-1.75□□□□□ -2.69
NPHP1O15259 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.75□□□□□ -2.69
NPHP1O15259 MIR3202-2-201ENST00000635980 79 ntBASIC-1.75□□□□□ -2.69
NPHP1O15259 RNU6-563P-201ENST00000364872 108 ntBASIC-1.76□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms