Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.435-201ENST00000384095 112 ntBASIC-1.66□□□□□ -2.67
CHD9Q3L8U1 MT-TL1-201ENST00000386347 75 ntBASIC-1.66□□□□□ -2.68
CHD9Q3L8U1 MIR1236-201ENST00000408340 102 ntBASIC-1.66□□□□□ -2.68
CHD9Q3L8U1 RNU4-71P-201ENST00000516258 113 ntBASIC-1.66□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.67□□□□□ -2.68
CHD9Q3L8U1 RNU6-644P-201ENST00000391155 98 ntBASIC-1.67□□□□□ -2.68
CHD9Q3L8U1 MIR548W-201ENST00000581970 74 ntBASIC-1.67□□□□□ -2.68
CHD9Q3L8U1 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.67□□□□□ -2.68
CHD9Q3L8U1 U2.14-201ENST00000615943 113 ntBASIC-1.67□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.68□□□□□ -2.68
CHD9Q3L8U1 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC-1.68□□□□□ -2.68
CHD9Q3L8U1 RNU6-665P-201ENST00000384639 107 ntBASIC-1.68□□□□□ -2.68
CHD9Q3L8U1 RNU6-971P-201ENST00000516920 106 ntBASIC-1.68□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.68□□□□□ -2.68
CHD9Q3L8U1 SNORD1B-201ENST00000363091 84 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 SNORD115-37-201ENST00000363768 82 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNY3P16-201ENST00000516338 101 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU6-694P-201ENST00000364071 147 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU6-682P-201ENST00000363843 106 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU6-806P-201ENST00000365147 105 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 SNORD127-201ENST00000458892 86 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU6-523P-201ENST00000516304 54 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU6-988P-201ENST00000519081 107 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 MIR3646-201ENST00000578301 84 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.69□□□□□ -2.68
CHD9Q3L8U1 RNU6-247P-201ENST00000362636 107 ntBASIC-1.7□□□□□ -2.68
CHD9Q3L8U1 SNORD18C-201ENST00000362704 69 ntBASIC-1.7□□□□□ -2.68
CHD9Q3L8U1 RNU6-1227P-201ENST00000383981 107 ntBASIC-1.7□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.7□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.455-201ENST00000384230 98 ntBASIC-1.7□□□□□ -2.68
CHD9Q3L8U1 RNY4P18-201ENST00000391107 89 ntBASIC-1.7□□□□□ -2.68
CHD9Q3L8U1 RNU7-61P-201ENST00000515897 61 ntBASIC-1.71□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.71□□□□□ -2.68
CHD9Q3L8U1 AL450471.1-201ENST00000447509 127 ntBASIC-1.71□□□□□ -2.68
CHD9Q3L8U1 AL160413.1-201ENST00000622780 310 ntBASIC-1.71□□□□□ -2.68
CHD9Q3L8U1 U6.104-201ENST00000637979 90 ntBASIC-1.71□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.72□□□□□ -2.68
CHD9Q3L8U1 RNU6-239P-201ENST00000390990 99 ntBASIC-1.72□□□□□ -2.68
CHD9Q3L8U1 MIR1263-201ENST00000408324 86 ntBASIC-1.72□□□□□ -2.68
CHD9Q3L8U1 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.72□□□□□ -2.68
CHD9Q3L8U1 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-1.72□□□□□ -2.68
CHD9Q3L8U1 SNORA27.2-201ENST00000363365 126 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 AL035470.1-201ENST00000622571 220 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 U6.97-201ENST00000636904 101 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 RNU6-450P-201ENST00000364654 107 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 SNORD58.1-201ENST00000391313 66 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 MIR5009-201ENST00000578736 100 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 MIR4777-201ENST00000583710 86 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 U7.2-201ENST00000607576 63 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 AC013734.1-201ENST00000619329 111 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.73□□□□□ -2.69
CHD9Q3L8U1 RNU6-982P-201ENST00000516216 102 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 AL731768.1-201ENST00000603124 139 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.70-201ENST00000362886 110 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 MIR363-201ENST00000384840 75 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 SNORD90-201ENST00000391145 111 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 RNU7-174P-201ENST00000516248 59 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.74□□□□□ -2.69
CHD9Q3L8U1 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 RNU6-918P-201ENST00000391219 106 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 RNU2-16P-201ENST00000410712 136 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 MIR4282-201ENST00000583613 67 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.210-201ENST00000364161 110 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 RNY1P1-201ENST00000364372 112 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 SNORD60-201ENST00000383903 83 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 RNU6-713P-201ENST00000384761 107 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 SNORD77.2-201ENST00000391045 68 ntBASIC-1.75□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.58-201ENST00000362807 102 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 RNY3P1-201ENST00000365085 102 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 RNU6-537P-201ENST00000517277 103 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 MIR4679-2-201ENST00000578358 77 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 MIR548N-201ENST00000408742 75 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.76□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-624P-201ENST00000363411 107 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-649P-201ENST00000384463 107 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 SNORD116-16-201ENST00000384533 92 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 SNORD19B-201ENST00000459623 84 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-635P-201ENST00000516651 102 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-182P-201ENST00000516970 105 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 MIR4643-201ENST00000577473 78 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-813P-201ENST00000384691 107 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNY3P2-201ENST00000362918 102 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 Y_RNA.277-201ENST00000364754 102 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-669P-201ENST00000365575 107 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 SNORD116-4-201ENST00000384733 96 ntBASIC-1.77□□□□□ -2.69
CHD9Q3L8U1 RNU6-275P-201ENST00000364910 107 ntBASIC-1.78□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 197.4 ms