Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Gm13036-201ENSMUST00000117799 748 ntBASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim54Q9ERP3 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gm12260-201ENSMUST00000122447 411 ntBASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Trim54Q9ERP3 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Gm15467-201ENSMUST00000120582 445 ntBASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.23■□□□□ 0.35
Trim54Q9ERP3 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim54Q9ERP3 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Gm7222-201ENSMUST00000117512 906 ntBASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Gm18622-201ENSMUST00000219361 595 ntBASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim54Q9ERP3 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim54Q9ERP3 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms