Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm10819-201ENSMUST00000099988 561 ntBASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Brf1Q8CFK2 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Gm27867-201ENSMUST00000184778 125 ntBASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 AC153889.1-201ENSMUST00000219257 330 ntBASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Brf1Q8CFK2 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Gm12895-201ENSMUST00000122214 226 ntBASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Brf1Q8CFK2 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Brf1Q8CFK2 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Gm15165-201ENSMUST00000118140 502 ntBASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Gm28033-201ENSMUST00000184224 96 ntBASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 AC153526.5-201ENSMUST00000218661 2147 ntBASIC19.26■□□□□ 0.67
Brf1Q8CFK2 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.26■□□□□ 0.67
Brf1Q8CFK2 AC127349.1-201ENSMUST00000224590 266 ntBASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Brf1Q8CFK2 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Brf1Q8CFK2 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Dancr-204ENSMUST00000132389 2347 ntBASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Gm25406-201ENSMUST00000157599 105 ntBASIC19.24■□□□□ 0.67
Brf1Q8CFK2 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Brf1Q8CFK2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms