Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb4Q6P8W9 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb4Q6P8W9 Slc35b2-202ENSMUST00000223987 1766 ntBASIC16.72■□□□□ 0.27
Hmgb4Q6P8W9 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Gm25745-201ENSMUST00000174945 133 ntBASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb4Q6P8W9 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb4Q6P8W9 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.71■□□□□ 0.26
Hmgb4Q6P8W9 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb4Q6P8W9 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb4Q6P8W9 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb4Q6P8W9 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb4Q6P8W9 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb4Q6P8W9 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Hmgb4Q6P8W9 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Hmgb4Q6P8W9 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms