Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
Usp28Q5I043 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
Usp28Q5I043 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.16■□□□□ 0.5
Usp28Q5I043 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usp28Q5I043 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Usp28Q5I043 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Usp28Q5I043 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.15■□□□□ 0.5
Usp28Q5I043 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Usp28Q5I043 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.15■□□□□ 0.5
Usp28Q5I043 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Usp28Q5I043 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.15■□□□□ 0.5
Usp28Q5I043 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Usp28Q5I043 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usp28Q5I043 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Usp28Q5I043 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Usp28Q5I043 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC18.14■□□□□ 0.49
Usp28Q5I043 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usp28Q5I043 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Usp28Q5I043 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
Usp28Q5I043 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.13■□□□□ 0.49
Usp28Q5I043 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
Usp28Q5I043 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.13■□□□□ 0.49
Usp28Q5I043 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Usp28Q5I043 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.12■□□□□ 0.49
Usp28Q5I043 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp28Q5I043 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Usp28Q5I043 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp28Q5I043 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.12■□□□□ 0.49
Usp28Q5I043 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Usp28Q5I043 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Usp28Q5I043 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.11■□□□□ 0.49
Usp28Q5I043 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Usp28Q5I043 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Usp28Q5I043 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.11■□□□□ 0.49
Usp28Q5I043 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms