Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Upf3aQ3ULJ3 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.75■□□□□ 0.27
Upf3aQ3ULJ3 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Upf3aQ3ULJ3 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Chchd1-203ENSMUST00000224633 557 ntBASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Upf3aQ3ULJ3 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Upf3aQ3ULJ3 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms