Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC13.59□□□□□ -0.23
Col8a1Q00780 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.59□□□□□ -0.23
Col8a1Q00780 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC13.59□□□□□ -0.23
Col8a1Q00780 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col8a1Q00780 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col8a1Q00780 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
Col8a1Q00780 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Col8a1Q00780 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Col8a1Q00780 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC13.58□□□□□ -0.24
Col8a1Q00780 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col8a1Q00780 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Col8a1Q00780 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Col8a1Q00780 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC13.58□□□□□ -0.24
Col8a1Q00780 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Col8a1Q00780 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC13.57□□□□□ -0.24
Col8a1Q00780 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Col8a1Q00780 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Gm8349-201ENSMUST00000182720 1003 ntBASIC13.56□□□□□ -0.24
Col8a1Q00780 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC13.56□□□□□ -0.24
Col8a1Q00780 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Col8a1Q00780 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms