Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Col3a1P08121 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC18.97■□□□□ 0.63
Col3a1P08121 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 Gm27397-201ENSMUST00000184997 107 ntBASIC18.97■□□□□ 0.63
Col3a1P08121 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col3a1P08121 AC174742.1-201ENSMUST00000218272 304 ntBASIC18.97■□□□□ 0.63
Col3a1P08121 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Col3a1P08121 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Col3a1P08121 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col3a1P08121 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col3a1P08121 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 H2af-ps-201ENSMUST00000119066 295 ntBASIC18.96■□□□□ 0.63
Col3a1P08121 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.96■□□□□ 0.63
Col3a1P08121 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Col3a1P08121 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col3a1P08121 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.95■□□□□ 0.62
Col3a1P08121 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Col3a1P08121 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Col3a1P08121 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.95■□□□□ 0.62
Col3a1P08121 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC18.95■□□□□ 0.62
Col3a1P08121 Gm7787-201ENSMUST00000216858 688 ntBASIC18.95■□□□□ 0.62
Col3a1P08121 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
Col3a1P08121 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col3a1P08121 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Ndufaf2-202ENSMUST00000223734 556 ntBASIC18.94■□□□□ 0.62
Col3a1P08121 Bloc1s5-203ENSMUST00000224902 612 ntBASIC18.94■□□□□ 0.62
Col3a1P08121 AC154572.2-201ENSMUST00000225105 997 ntBASIC18.94■□□□□ 0.62
Col3a1P08121 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col3a1P08121 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
Col3a1P08121 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Col3a1P08121 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Col3a1P08121 Prkcz2-201ENSMUST00000206136 1756 ntBASIC18.93■□□□□ 0.62
Col3a1P08121 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC18.93■□□□□ 0.62
Col3a1P08121 Gm17968-201ENSMUST00000194902 784 ntBASIC18.93■□□□□ 0.62
Col3a1P08121 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
Col3a1P08121 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Col3a1P08121 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col3a1P08121 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC18.92■□□□□ 0.62
Col3a1P08121 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Col3a1P08121 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC18.92■□□□□ 0.62
Col3a1P08121 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.92■□□□□ 0.62
Col3a1P08121 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Col3a1P08121 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Gm44729-201ENSMUST00000206759 2052 ntBASIC18.92■□□□□ 0.62
Col3a1P08121 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col3a1P08121 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.91■□□□□ 0.62
Col3a1P08121 Gm15500-202ENSMUST00000071641 1019 ntBASIC18.91■□□□□ 0.62
Col3a1P08121 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col3a1P08121 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms