Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 Y_RNA.685-201ENST00000516532 108 ntBASIC0.44□□□□□ -2.34
NR2E3Q9Y5X4 SNORA40.17-201ENST00000517256 115 ntBASIC0.44□□□□□ -2.34
NR2E3Q9Y5X4 MIR4473-201ENST00000583731 91 ntBASIC0.44□□□□□ -2.34
NR2E3Q9Y5X4 MIR760-201ENST00000390220 80 ntBASIC0.43□□□□□ -2.34
NR2E3Q9Y5X4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
NR2E3Q9Y5X4 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.43□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-330P-201ENST00000363015 107 ntBASIC0.42□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-857P-201ENST00000515893 110 ntBASIC0.42□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-303P-201ENST00000517091 106 ntBASIC0.42□□□□□ -2.34
NR2E3Q9Y5X4 MIR4677-201ENST00000584153 80 ntBASIC0.42□□□□□ -2.34
NR2E3Q9Y5X4 MIR548AD-201ENST00000584780 82 ntBASIC0.42□□□□□ -2.34
NR2E3Q9Y5X4 MIR4773-1-201ENST00000637203 78 ntBASIC0.42□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 RNA5SP128-201ENST00000365305 116 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 Y_RNA.407-201ENST00000383986 113 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-815P-201ENST00000384080 113 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 RNU6-154P-201ENST00000384306 106 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 MIR652-201ENST00000385278 98 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 SCARNA18B-201ENST00000458806 135 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 Y_RNA.788-201ENST00000622394 112 ntBASIC0.41□□□□□ -2.34
NR2E3Q9Y5X4 AC108740.1-201ENST00000498629 225 ntBASIC0.39□□□□□ -2.35
NR2E3Q9Y5X4 MIR4802-201ENST00000581881 80 ntBASIC0.39□□□□□ -2.35
NR2E3Q9Y5X4 MIR3925-201ENST00000584674 77 ntBASIC0.39□□□□□ -2.35
NR2E3Q9Y5X4 MIR499B-201ENST00000636498 73 ntBASIC0.39□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-1039P-201ENST00000383931 107 ntBASIC0.38□□□□□ -2.35
NR2E3Q9Y5X4 MIR4484-201ENST00000582855 83 ntBASIC0.38□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-1094P-201ENST00000362416 104 ntBASIC0.37□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-990P-201ENST00000364385 104 ntBASIC0.37□□□□□ -2.35
NR2E3Q9Y5X4 MIR582-201ENST00000365731 98 ntBASIC0.37□□□□□ -2.35
NR2E3Q9Y5X4 MIR6718-201ENST00000616153 80 ntBASIC0.37□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-24P-201ENST00000384440 107 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-30P-201ENST00000384561 107 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 Z95118.1-201ENST00000421372 247 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-274P-201ENST00000459566 107 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 SCARNA17.3-201ENST00000516381 125 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 AC069113.3-201ENST00000521019 150 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 U7.6-201ENST00000610841 64 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 uc_338.10-201ENST00000621872 182 ntBASIC0.36□□□□□ -2.35
NR2E3Q9Y5X4 RNU6-127P-201ENST00000390897 107 ntBASIC0.35□□□□□ -2.35
NR2E3Q9Y5X4 MIR548H2-201ENST00000408874 88 ntBASIC0.35□□□□□ -2.35
NR2E3Q9Y5X4 AC073261.1-201ENST00000429409 121 ntBASIC0.35□□□□□ -2.35
NR2E3Q9Y5X4 MIR1297-201ENST00000637311 77 ntBASIC0.35□□□□□ -2.35
NR2E3Q9Y5X4 SNORA9.1-201ENST00000362412 131 ntBASIC0.34□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-681P-201ENST00000364012 104 ntBASIC0.34□□□□□ -2.36
NR2E3Q9Y5X4 MIR516B1-201ENST00000385211 90 ntBASIC0.34□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-752P-201ENST00000516376 102 ntBASIC0.34□□□□□ -2.36
NR2E3Q9Y5X4 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
NR2E3Q9Y5X4 MIR5190-201ENST00000581537 80 ntBASIC0.34□□□□□ -2.36
NR2E3Q9Y5X4 RNA5SP98-201ENST00000363158 137 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 Y_RNA.185-201ENST00000363894 100 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 MIR876-201ENST00000401147 81 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 MIR548E-201ENST00000408287 88 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-175P-201ENST00000516896 107 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 MIR3657-201ENST00000584818 117 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 MIR664A-201ENST00000626086 82 ntBASIC0.33□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-260P-201ENST00000384092 107 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 MIR203A-201ENST00000384836 110 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 RNA5SP25-201ENST00000410815 110 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 AL691482.2-201ENST00000457453 84 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 RNU7-129P-201ENST00000516128 62 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 MIR6509-201ENST00000614603 85 ntBASIC0.32□□□□□ -2.36
NR2E3Q9Y5X4 SNORD114-4-201ENST00000363962 75 ntBASIC0.31□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-807P-201ENST00000516805 107 ntBASIC0.31□□□□□ -2.36
NR2E3Q9Y5X4 RNU7-188P-201ENST00000517063 64 ntBASIC0.31□□□□□ -2.36
NR2E3Q9Y5X4 MIR3134-201ENST00000579433 74 ntBASIC0.31□□□□□ -2.36
NR2E3Q9Y5X4 RN7SL660P-201ENST00000614852 299 ntBASIC0.31□□□□□ -2.36
NR2E3Q9Y5X4 Y_RNA.244-201ENST00000364484 109 ntBASIC0.3□□□□□ -2.36
NR2E3Q9Y5X4 SNORA8.1-201ENST00000384250 140 ntBASIC0.3□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-380P-201ENST00000410207 107 ntBASIC0.3□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-782P-201ENST00000516852 104 ntBASIC0.3□□□□□ -2.36
NR2E3Q9Y5X4 MIR4315-1-201ENST00000636800 73 ntBASIC0.3□□□□□ -2.36
NR2E3Q9Y5X4 MIR4315-2-201ENST00000640925 73 ntBASIC0.3□□□□□ -2.36
NR2E3Q9Y5X4 SNORA49-201ENST00000386157 136 ntBASIC0.29□□□□□ -2.36
NR2E3Q9Y5X4 MIR3675-201ENST00000583661 73 ntBASIC0.29□□□□□ -2.36
NR2E3Q9Y5X4 AC145423.2-201ENST00000610631 239 ntBASIC0.29□□□□□ -2.36
NR2E3Q9Y5X4 Y_RNA.633-201ENST00000459107 95 ntBASIC0.28□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-523P-201ENST00000516304 54 ntBASIC0.28□□□□□ -2.36
NR2E3Q9Y5X4 RNU6-638P-201ENST00000516582 104 ntBASIC0.28□□□□□ -2.36
NR2E3Q9Y5X4 MIR20A-201ENST00000362279 71 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 SNORA2.1-201ENST00000363089 137 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 AC244090.1-201ENST00000441884 93 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 RNU6-758P-201ENST00000516292 89 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 AC084368.1-201ENST00000620935 65 ntBASIC0.27□□□□□ -2.37
NR2E3Q9Y5X4 RNA5SP331-201ENST00000364986 107 ntBASIC0.26□□□□□ -2.37
NR2E3Q9Y5X4 U7.4-201ENST00000614961 63 ntBASIC0.26□□□□□ -2.37
NR2E3Q9Y5X4 SNORD114-29-201ENST00000364819 70 ntBASIC0.25□□□□□ -2.37
NR2E3Q9Y5X4 MIR643-201ENST00000385267 97 ntBASIC0.25□□□□□ -2.37
NR2E3Q9Y5X4 snoU13.13-201ENST00000458842 104 ntBASIC0.25□□□□□ -2.37
NR2E3Q9Y5X4 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.25□□□□□ -2.37
NR2E3Q9Y5X4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.24□□□□□ -2.37
NR2E3Q9Y5X4 SNORD114-15-201ENST00000364687 72 ntBASIC0.24□□□□□ -2.37
NR2E3Q9Y5X4 RNA5SP147-201ENST00000516493 109 ntBASIC0.24□□□□□ -2.37
NR2E3Q9Y5X4 MIR4768-201ENST00000585270 74 ntBASIC0.24□□□□□ -2.37
NR2E3Q9Y5X4 SNORA42.1-201ENST00000363515 137 ntBASIC0.23□□□□□ -2.37
NR2E3Q9Y5X4 SNORA63.6-201ENST00000364921 119 ntBASIC0.23□□□□□ -2.37
NR2E3Q9Y5X4 MIR889-201ENST00000401280 79 ntBASIC0.23□□□□□ -2.37
NR2E3Q9Y5X4 RNU6-687P-201ENST00000516443 89 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 210.6 ms